Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3303 118 1e-21 >seq3303 Length=47767 Score = 118 bits (130), Expect = 1e-21 Identities = 434/672 (65%), Gaps = 17/672 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | ||| ||||| ||||| || || || || |||| || || Sbjct 41343 TTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 41402 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGA-ATGTCGTCCTTCAA 153193 ||||| |||| || || |||| || |||||| | | | || | ||||||| Sbjct 41403 GGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAG 41461 Query 153194 CGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC 153253 | || ||| ||| ||| | | || || | ||||||||||||||| | | || Sbjct 41462 CAGCTTCCAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCC 41521 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCGC 153312 ||| ||||| ||| || |||| |||| |||| || | |||||| |||| Sbjct 41522 CTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCGC 41580 Query 153313 AGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG 153372 |||| ||||| || ||| | | ||| |||| ||| |||||| |||| || | | Sbjct 41581 AGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAG 41640 Query 153373 CTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 | |||| ||| ||| |||| |||| || | ||||| || |||| ||| |||| | Sbjct 41641 CCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGC 41700 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTGC-----TGCGCCTCGCGCTCGCTATGGGATA 153487 | | || || || | || || |||| | ||| ||| || | ||||| Sbjct 41701 CAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACT-----GGATA 41755 Query 153488 GTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAG 153547 || || ||||| | ||||| | || || | ||||| || | | || Sbjct 41756 GTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAG 41815 Query 153548 TTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGC 153607 ||| | || ||| | ||| || || | | ||| | || | ||||| || || Sbjct 41816 TTTTTTAAAGTCAAAAGTCCGCTC--CGGGGTG-ACGTACATGTTGAGCGCAATTGAGGC 41872 Query 153608 CAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT 153667 ||||||||| || || ||| ||| | | |||||| | || || | ||||||||| Sbjct 41873 CAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTTCTGTGCAGAGGTT 41932 Query 153668 GCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAA 153727 |||| | || ||| ||||| ||| || || ||||| || | ||||| ||||||||| | Sbjct 41933 GCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 41992 Query 153728 GAGCATGTACGG 153739 |||||||| || Sbjct 41993 CAGCATGTATGG 42004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496197333796080