Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3303 152 5e-32 seq1 95.1 1e-14 >seq3303 Length=47767 Score = 152 bits (168), Expect = 5e-32 Identities = 435/663 (66%), Gaps = 11/663 (2%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || ||||| |||||||| ||||||||||||||||||||||| | ||| || Sbjct 42016 GAAACTGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAG 41957 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 || |||| || || || | || || || ||| | |||||||| || |||| | | Sbjct 41956 AATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGAAATTATYGAGTACACCAGCCAC 41897 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTCGAAAACGG 123784 ||| | || || ||||||||| |||| || | ||||| | || | |||| | ||| Sbjct 41896 GATGAGGTAGCGGTGTGTAATCTGGCCTC-AATTGCGCTCAACATGTACGTC-ACCCCGG 41839 Query 123785 CG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 | ||||| | || ||| || | | || ||| | || |||||||||| Sbjct 41838 AGCGGACTTTTGACTTTAAAAAACTGGCATCTGTGACCAAAGTAATCGTCAAGAATTTGA 41779 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 |||| | ||||| |||| | ||||| || |||||| ||| || | | Sbjct 41778 ACAAGGTCATCGAAATTAACTACTATCCAGTGCCCGAAGCGGAAAAGTCCAACAAGCGCC 41719 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 |||| ||| | ||| | ||| | ||||| ||||| || || || | | |||| | Sbjct 41718 ACAGGCCGATTGGAATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACC 41659 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 ||| ||||||| | || || || |||| |||| ||||| ||| | || || ||| Sbjct 41658 CGTTCGAAAGCAAAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGCCATCTACCACG 41599 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGG 124080 ||| |||||||||||||||| || || | |||| | ||||| | ||||| | Sbjct 41598 CCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAG 41539 Query 124081 GCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATT 124140 || || | ||| || || ||||||||||||||||| | | || || | Sbjct 41538 GCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGCCCACCGAAC 41479 Query 124141 TGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCT 124198 || |||||||| | | || | | | |||| | ||||| || | ||| || Sbjct 41478 TGCTGGACTGGAAGCTGCTGAAGGA--GAAGATCGCCATCCACGGCGTGAGGAACAGCCT 41421 Query 124199 GTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTT 124258 | || |||| ||||| ||||| |||| || || || | || |||||||| ||| | Sbjct 41420 GCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCAT 41361 Query 124259 CGA 124261 ||| Sbjct 41360 CGA 41358 >seq1 Length=4870262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || |||||| | || ||||||||| ||||| |||||||||||||| |||||||||||| Sbjct 4203026 ATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAGGACGCCTGCAAC 4202967 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||| ||| || |||| || || |||| || ||||| ||| | || || Sbjct 4202966 AGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATC 4202907 Query 123708 ATCGAATACA 123717 | || |||| Sbjct 4202906 GTAGAGTACA 4202897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451943936730440