Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq454 116 5e-21 seq412 111 2e-19 seq2938 109 8e-19 >seq454 Length=519262 Score = 116 bits (128), Expect = 5e-21 Identities = 202/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || ||||| | || ||||| || || | | | | || ||||||| | | Sbjct 192674 CCGTCCAGCGATCTGATTGGTAAACGACTCCACAAGGTTGCCGATGCCGTGCTCCGTCAC 192615 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 | ||| |||||| | || || |||| || |||| || | ||| | ||| Sbjct 192614 CACGGAGTTGTTGAAGACAAACTGTTTATAGTTGTACTCTTTCTCCTCAATGTGGAAAGT 192555 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||| |||| ||||| |||||| |||| ||||| |||||||||| || || |||||||| Sbjct 192554 ATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGCGGTTCTG 192495 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| |||||| | ||| |||||||| | |||| ||||| || Sbjct 192494 GTACTGGAAGCGCTGGT--TGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTTATAG 192437 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| || ||||| || || | ||| | ||| || ||||| || || Sbjct 192436 CCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 192387 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | | |||||| |||| |||||||| | | || | Sbjct 191816 ATGAGCCGTGTGGTCTGGAAGAGCCTCTCGTCGTCCCAGTCCGGGTGGACCTCCTTCAAC 191757 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || || || |||| ||||||||||| ||||| ||||||||||||||||| | || || Sbjct 191756 ACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCGGGG 191697 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||| | || | ||||| || ||||| || ||||| |||| || | Sbjct 191696 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACTTGAGGAGGG 191637 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || |||| | || ||| || || || |||||||||| || || || | |||| Sbjct 191636 TAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACACCTCTCCATCCAGAACC 191577 Query 9967 TG 9968 || Sbjct 191576 TG 191575 >seq412 Length=547801 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || ||||| ||||| | || || || || || ||||||||||| ||||||||| Sbjct 407065 GTGGCAGTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTAC 407006 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | |||||||||||| ||| |||| || ||||||| ||| || ||||| |||| ||| Sbjct 407005 TCAGGGGAGCAGATGGGGTTTGCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCC 406946 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | || |||||||| ||||| || || || | |||||| | | | ||| | ||| Sbjct 406945 ACCATACTCTCACCAAAGATACCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAA 406886 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | || | ||| || | ||| || ||||| Sbjct 406885 AACTCCAAAGCATCTATGTCACCGTAGAG 406857 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| ||||| | || || || || || ||||||||||| ||||||||| | ||| Sbjct 393073 GTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGG 393014 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 ||||||||| ||| ||| || || |||| ||| || ||||| |||| ||| | || Sbjct 393013 GAGCAGATGGGGTTTCCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATA 392954 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 |||||||| || | |||||| | ||| || | | || ||| | ||||| || Sbjct 392953 CTCTCACCAAACAGTCTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCC 392894 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | ||| || | ||| |||||||| Sbjct 392893 AAAGCATCTATGTCACCATAGAG 392871 >seq2938 Length=62945 Score = 109 bits (120), Expect = 8e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || | |||||| ||||| || || || | || |||||||||||||| |||||||| Sbjct 60569 GTGGCAGATTTCACTATGTCAAAGCCGACTTTGCCTCCGAAGGTGCTGGGCTTCCAGTAA 60510 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || || || ||| ||| ||| ||||| | ||| || || || |||| ||| Sbjct 60509 TCTGGAGAACATATAGGGTTTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCGCCCATCTCT 60450 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 || |||||||| || || ||||| || | || | | || | | || |||| ||| Sbjct 60449 ATCATGCTCTCTCCAAATATGGCCCCCTGTCGTGTTCCCTCCAACAGTAAACCAGGGTAA 60390 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 | ||| ||||| || | ||| || |||| | || | |||| |||||||||| Sbjct 60389 AATTCAACAGCATCAATGTCACCGTAGAATTCCTCAAGCTCGCGGGCTATCTCCT 60335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723633110212600