Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3303 176 6e-39 seq1 89.7 6e-13 >seq3303 Length=47767 Score = 176 bits (194), Expect = 6e-39 Identities = 602/919 (66%), Gaps = 39/919 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 41337 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 41396 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-----C 116017 || |||||||| || |||| || |||||||| | ||| || ||| | Sbjct 41397 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCT------CACGCCGTGGATGGCGATC 41450 Query 116018 GT-TCCTTGAGGGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAA 116074 | ||||| || | |||||| | |||| | | | || | ||||||||| || Sbjct 41451 TTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGT 41508 Query 116075 ACTGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 116132 |||| ||||| || | | |||| || || || | | ||||| || ||||| | Sbjct 41509 ACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTC 41566 Query 116133 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 116192 | |||| ||| |||||||||| ||||| ||||| || || | ||| || || || Sbjct 41567 GGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAAT 41626 Query 116193 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGC 116252 ||||| || ||||| | | || |||| | ||| | || || ||||||| Sbjct 41627 ATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGC 41686 Query 116253 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 116312 | ||||||||| || | ||||| || | || | | | || |||||| || Sbjct 41687 CAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGG 41746 Query 116313 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 116372 ||| ||||| | || | ||||| ||| | || | ||| ||| || || || || | Sbjct 41747 CACTGGATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCAC 41806 Query 116373 TTCATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 ||| || |||| | |||||| | || ||| |||| ||| | || | Sbjct 41807 AG-ATGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGCG 41862 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 | ||||| |||||||||||||| | |||||| | |||||||| |||||||| | Sbjct 41863 CAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTTCTG 41922 Query 116492 TACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 116549 | || | || || | ||| |||||||||| |||| ||| || ||| |||| || Sbjct 41923 TGCAGAGGTTGCTGGA--CTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCA 41980 Query 116550 CGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 116609 || || ||||| ||||| |||||||| || || || || ||||||| || || || | Sbjct 41981 GGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTG 42040 Query 116610 CCA-TACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 ||| || | | | || ||| | ||| ||||| || ||| || |||| Sbjct 42041 CCACAACTGCTGAGCCT-TCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGT 42099 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 |||| || ||||| || ||| |||| ||| |||||||| || | ||||| Sbjct 42100 AGAGCTTTTCGAACTCCTC-CCCCCAGCACTCGTCCAGCCCTGGGCACTCGTTGGGACAC 42158 Query 116728 AAGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 116785 | |||||||| | || | | ||| || | ||||||||| ||||| || ||||| | Sbjct 42159 ATCAGAGACCA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGRATCCACA 42216 Query 116786 GCGCCG-AGAAGAGATCCC 116803 | |||| |||| || |||| Sbjct 42217 G-GCCGTAGAAAAGGTCCC 42234 >seq1 Length=4870262 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||| ||||| |||| ||| || || ||||| Sbjct 4201966 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 4202025 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| || ||||| Sbjct 4202026 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 4202057 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 |||||| ||| |||||||||| || ||||| |||| ||| || | | | |||||| Sbjct 4202883 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 4202940 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| |||| || || ||| |||| || || |||||||||||||| |||||||| Sbjct 4202941 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 4203000 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 || || || || || || | || || || | ||| || Sbjct 4203001 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 4203038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613426761537240