Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3303 161 2e-34 seq1 98.7 2e-15 >seq3303 Length=47767 Score = 161 bits (178), Expect = 2e-34 Identities = 291/419 (69%), Gaps = 5/419 (1%) Strand=Plus/Plus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| || ||||| || || ||||||| | ||||| |||| Sbjct 41209 CCTGAATGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACA-GCCCT 41267 Query 204159 ACCTGA-TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACC 204217 || |||| || | ||| || ||||||| ||||||||| |||||||| || ||| Sbjct 41268 CTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACC 41327 Query 204218 CCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGA 204277 | |||||| | | |||| ||||| | | ||||| | |||||||||||| | ||||| Sbjct 41328 CTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGG 41387 Query 204278 GCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGG 204337 |||||| |||||||||||| || ||||| |||||| ||| | ||| |||| | | Sbjct 41388 GCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCG 41447 Query 204338 ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397 | | | |||||| ||||||| ||| | |||| ||| ||||||||||| Sbjct 41448 ATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCG 41507 Query 204398 AACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTC 204456 |||| | |||||| | ||||| || ||| ||||||| || ||| || ||| Sbjct 41508 TACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGA-GCTC 41566 Query 204457 TTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAA 204515 | ||||||| ||| || ||| |||| | ||| |||| ||| ||||| |||| Sbjct 41567 GGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAA 41625 Score = 118 bits (130), Expect = 2e-21 Identities = 320/480 (67%), Gaps = 18/480 (4%) Strand=Plus/Plus Query 204844 GGCCAGATTGCACACCGCGGG-TCTGTGTGGCTCGCTCACCTCCACGATCTCGGTGCACA 204902 ||||||||| |||||||| || |||||| | || || | || || ||||| | Sbjct 41870 GGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTAC-TCRATAATTTCTGTGCAGA 41928 Query 204903 AGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCT 204962 ||| | | |||| | |||| || ||| ||||| ||| | ||| |||| ||| | Sbjct 41929 GGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTT 41988 Query 204963 TGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCACAAT 205021 |||||| |||| | ||| | || | || |||| || ||| | || | | |||||| Sbjct 41989 TGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCG-ATAACGGCGTGCCACAAC 42047 Query 205022 TCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGC 205078 | |||||| |||| |||| | || |||| || ||| || ||||| ||| Sbjct 42048 TGCTGAGCCTTCACCACGCGCTTGA---ACTTCCCCTGCTTCTCATAGGAGGTGTAGAGC 42104 Query 205079 GCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGACATTTTTTGGGACACATC 205135 | || || || | || |||||| ||||||| || | |||||||||||| Sbjct 42105 TTTTCGAACTCCTCCCCCCAGCACTCGTCCA---GCCCTGGGCACTCGTTGGGACACATC 42161 Query 205136 AGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCG 205195 |||||||| || | | | ||| |||| ||| ||||||||| |||||||||||| Sbjct 42162 AGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGRATCCACAGGCCG 42221 Query 205196 TAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAA 205255 || || || || | ||| || | || | ||| |||||| || | ||||| || Sbjct 42222 TAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAG-GAA 42280 Query 205256 GCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTT 205314 | | | | |||||||||||| ||||| | ||| ||| | || ||||| |||||||| Sbjct 42281 GTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTT 42340 >seq1 Length=4870262 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | | | Sbjct 4201928 TGCTGACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCT 4201987 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | |||||||||||| | ||||| |||||| || ||||||||||| |||| || Sbjct 4201988 CAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGA 4202047 Query 204309 GCAGGGAGTTGCGCACACC 204327 |||| ||| | |||||| Sbjct 4202048 GCAGACTGTTCCTCACACC 4202066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795050945213840