Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3303 145 9e-30 seq4546 87.8 2e-12 >seq3303 Length=47767 Score = 145 bits (160), Expect = 9e-30 Identities = 645/1004 (64%), Gaps = 25/1004 (2%) Strand=Plus/Minus Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || || |||| || || ||||| || || || |||||||||||||| ||| | | Sbjct 42232 GACCTTTTCTACGGCCTGTGGATYCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAG 42173 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGA 112207 | |||||||| | ||||| || || || || || ||| ||| | ||| ||||| Sbjct 42172 GACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGCTGGACGAGTGCTGGGGG-GAGGA 42114 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGG--CGACTGCGACGGTGCCA 112265 ||| ||| |||||||| || ||| ||| | | | | | ||| |||| Sbjct 42113 GTTCGAAAAGCTCTACACCTCCTATGAG-AAGCAGGGGAAGTTCAAGCGCGT-GGTGAAG 42056 Query 112266 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATG 112325 ||| | ||||| | || || || |||| || || || ||||| || ||||| ||| Sbjct 42055 GCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACATG 41996 Query 112326 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 112385 || |||||||||||||| ||| ||||| || ||| ||||| |||| |||||| Sbjct 41995 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCC 41936 Query 112386 TCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 112445 ||||||||| |||||||| | || | || | | |||||| || |||||||| Sbjct 41935 AGCAACCTCTGCACAGAAATTATYGAGTACACCAGCCACGATGAGGTAGCGGTGTGTAAT 41876 Query 112446 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAA 112505 || || ||||| || ||| || ||| || || ||| ||| ||||| | | || Sbjct 41875 CTGGCCTCAATTGCGCTCAACATGTACGTCACCCCGGAG---CGGACTTTTGACTTTAAA 41819 Query 112506 AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 ||||| || || ||| || || || | |||| || || || | || Sbjct 41818 AAACTGGCATCTGTGACCAAAGTAATCGTCAAGAATTTGAACAAGGTCATCGAAATTAAC 41759 Query 112566 TTTTACCCCGTTGAGACTG-CTCGTAAA--TCTAATATGAGACACCGTCCAATTGGTCTC 112622 | || || || | | | || ||| || || | | | ||| | || ||||| | Sbjct 41758 TACTATCCAGT---GCCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATT 41702 Query 112623 GGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 112682 || ||||||||| | ||||||| ||||| || || || | || || | | || Sbjct 41701 GGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCAAAGAG 41642 Query 112683 GCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGT 112742 || || | ||| | || || ||| | || || |||||||| || |||||||| Sbjct 41641 GCTCAGCTGCTGAATATTCAAATCTTCGAGGCCATCTACCACGCCGCCCTGGAGGCGAGC 41582 Query 112743 TCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CA 112801 | ||| |||| | | || || || || || | | || ||||| | ||| || Sbjct 41581 TGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCC--CGTCAGCA 41524 Query 112802 AGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGA 112858 |||| | || || | || |||||||| || ||| | ||| | |||| ||| Sbjct 41523 AGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGCCCA--CCGAACTGCTGGACT-GGA 41467 Query 112859 CGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAA 112917 ||| || ||||| ||| | || | | ||||| || || |||| || | Sbjct 41466 AGCTGCTGAAGGAGAAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGA 41407 Query 112918 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 112977 |||| || ||||||||||| || ||| |||| || || || | | | ||| ||||||| | Sbjct 41406 TGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCA 41347 Query 112978 CGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCG 113037 |||||||| | || |||| | ||||||||| ||| |||||| ||||| Sbjct 41346 GCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGC 41287 Query 113038 TGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 | | ||||| | |||| || || ||| | |||| |||||| Sbjct 41286 TCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 41243 >seq4546 Length=26461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 |||||| | | || |||||| || ||||| ||||||||||| || || ||| || Sbjct 23565 GAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 23506 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | ||||||||||||| |||| || ||||| || || || |||||||||||| || Sbjct 23505 ATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 23446 Query 102300 TCTCGTGACGAGG 102312 ||| || |||| Sbjct 23445 AGTCGGGATGAGG 23433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620661012912080