Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq287 113 4e-19 seq415 104 2e-16 >seq287 Length=613563 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || ||||| || || || |||||||| || || || || |||||||||| Sbjct 483993 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAAGATG 483934 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||||| ||||| ||||||||||| || |||||||| Sbjct 483933 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 483874 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 483873 TCGCCTATGGGCTGGACAAA 483854 >seq415 Length=537748 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | ||||| || || || || |||||||| || || || || || ||||||| Sbjct 50498 ATGCAGTCGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 50439 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| |||||||| |||||||| ||||| || || ||||||||||| Sbjct 50438 CAGGCACCATTTCTGGGCTTAATGTCCTTCGTATCATCAACGAGCCGACTGCTGCTGCTA 50379 Query 550518 TTGCATATGGACTTGATAAA 550537 | || || || || |||||| Sbjct 50378 TCGCGTACGGCCTGGATAAA 50359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028741294374610