Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1105 116 3e-21 >seq1105 Length=216922 Score = 116 bits (128), Expect = 3e-21 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 112108 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 112167 |||||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 17925 TCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 17984 Query 112168 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| || ||||| ||||| ||||||||||||| ||||||| Sbjct 17985 AACCATGTTTTTCTGCCCATGATCACCACGTTCTTCTTGCCT 18026 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/121 (79%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 111860 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTATGGGAGAAAAGTGTCGCACGCAA 111919 |||||||||||||||||||| | ||| |||| | | ||||| || ||||||||| ||| Sbjct 13436 ACTCTGGCAGTAGACGATATTTGTCTGGACTGATTTCAGGGAGGAACGTGTCGCACTCAA 13495 Query 111920 ATTGCGTC--GACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTC 111977 | ||| || || ||| ||||| ||||| ||| | |||||| |||||||||| | ||| Sbjct 13496 ACTGCTTCAGGATTCGT--GTGACGAACAGTCTCCTGGTCCCCAGGCTCTCCATCAACTC 13553 Query 111978 C 111978 | Sbjct 13554 C 13554 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 112275 CCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGATACCGTT 112334 ||| ||||| | ||| || ||||||||||||| ||| |||||||| ||||||||| |||| Sbjct 21973 CCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACCGCCACGATAGCGTT 22032 Query 112335 CAGAATGAGGG 112345 ||||||| ||| Sbjct 22033 CAGAATGCGGG 22043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408565364496797