Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3303 208 1e-48 seq4546 91.5 3e-13 seq1 91.5 3e-13 >seq3303 Length=47767 Score = 208 bits (230), Expect = 1e-48 Identities = 336/478 (70%), Gaps = 7/478 (1%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| |||||||| || ||||| || | | |||| |||| || || ||||| ||||| Sbjct 41870 GGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTTCTGTGCAGAG 41929 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||||||| |||||||||| ||||| | | || || ||| | ||| ||||| || Sbjct 41930 GTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 41989 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || |||||| || ||| | | | | || || ||| | | Sbjct 41990 GTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTG 42049 Query 221893 TCTG-GCGCTCACCGTCCTCTTGA-CTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || ||||| | ||||| || | |||| ||| ||||| ||| |||||| Sbjct 42050 -CTGAGCCTTCACCACGCGCTTGAACTTC-CCCTG---CTTCTCATAGGAGGTGTAGAGC 42104 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | || |||| || || | ||||||||| ||||| ||| | ||||||||||||| Sbjct 42105 TTTTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCTGGGCACTCGTTGGGACACATCAGA 42164 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| || |||| | || |||| |||||| ||||| || |||||||| | | Sbjct 42165 GACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGRATCCACAGGCCGTAG 42224 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || || || |||| | |||||||||| ||| |||| ||| | || |||| || ||| Sbjct 42225 AAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCA 42284 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 || | ||| |||||||| |||||||| || | ||| | || || |||| |||||||| Sbjct 42285 AACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGC 42342 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || ||||| ||| | |||| || || ||| || | Sbjct 41246 CATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGAT 41305 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| ||||| ||||| | ||| | ||| ||| | | ||||||| Sbjct 41306 CTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGA 41365 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 41366 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 41425 Query 221245 GTT 221247 ||| Sbjct 41426 GTT 41428 >seq4546 Length=26461 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || ||||| || |||||||||||||| ||| ||| || || || Sbjct 23568 GGGGAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 23509 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGCTGTACTTTTCCAACGAGCT 25991 |||||||| ||||||||| ||| | |||| | |||| || || || ||||||||||| Sbjct 23508 GCCATCTTTTGGCTCAAGAAGA-GAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCT 23450 Query 25992 CATCAGCAGGGACGAGG 26008 || || |||| |||| Sbjct 23449 GATTAGTCGGGATGAGG 23433 >seq1 Length=4870262 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||||||||||||||| | ||| | ||| ||| | | || ||| Sbjct 4201933 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATG 4201992 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| Sbjct 4201993 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 4202052 Query 221243 CTGTT 221247 ||||| Sbjct 4202053 CTGTT 4202057 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| || ||||| |||||||||| || ||| || ||||||| || ||||||||| Sbjct 4203422 CATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCCTCTGCTCCTCTTT 4203481 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||| ||| ||| ||||| || ||||| | || |||||||||||||| || Sbjct 4203482 ACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGGCTCCAGGTA 4203541 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || ||||||| || Sbjct 4203542 CACAGCGAAGGCCCCGGGTCTCT 4203564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928723016836160