Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq287 98.7 6e-15 seq3065 93.3 3e-13 >seq287 Length=613563 Score = 98.7 bits (108), Expect = 6e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| |||||||| || || || || || ||||| || || || || || |||||||||| Sbjct 483993 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAAGATG 483934 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||| | || || |||||| | ||||| || |||||||||||||| || || Sbjct 483933 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 483874 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || || || Sbjct 483873 TCGCCTATGGGCTGGACAAAAA 483852 >seq3065 Length=55652 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || || || || |||| || || | ||| | || || Sbjct 24044 TGAAGGGGAGAGAGCTATGACCAAGGACAACAACATCCTGGGCAAGTTTGAGCTGACCGG 23985 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| || ||||| ||||| || || ||||| |||||||| || Sbjct 23984 TATTCCACCTGCTCCCAGAGGTGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 23925 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 23924 TGGCATTCTCAATGTGTCTGC 23904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267729275897372