Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3303 219 5e-52 seq1 111 2e-19 seq4546 82.4 9e-11 >seq3303 Length=47767 Score = 219 bits (242), Expect = 5e-52 Identities = 653/990 (66%), Gaps = 25/990 (3%) Strand=Plus/Minus Query 75703 CCTGTGGATTCCAGACCTTTTCATGAAGCGGGT--TGAGGAGGGTGGTCAATGGTCTCTT 75760 ||||||||| || ||||| ||||||||| | || ||| | | || | |||||||| Sbjct 42218 CCTGTGGATYCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAGG--ACTGGTCTCTG 42161 Query 75761 TTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCT 75819 | ||||| || || ||||| || ||| || | ||| |||||||| ||| || Sbjct 42160 ATGTGTCCCAACGAGTGCCCAGGGCTGGACGAGTGCTG-GGGGGAGGAGTTCGAAAAGCT 42102 Query 75820 CTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-T 75878 |||||| ||||| || |||| | || | ||| || || | | | ||| | Sbjct 42101 CTACACCTCCTATGAGAAGCAGGGGA-AGTTCAAGCGCGTGGTGAAGGCTCAGCAGTTGT 42043 Query 75879 GGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATG 75938 || | || || || | || ||||| || ||||| || ||||| ||||| ||||| || | Sbjct 42042 GGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACATGCTGTACAAAGACG 41983 Query 75939 CTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCA 75998 | || |||| |||||| |||||| ||||| |||| || |||||| | || || |||| Sbjct 41982 CCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCA 41923 Query 75999 CGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCG 76058 | |||||| | |||||||| | |||||| || || || ||| |||| ||||| | Sbjct 41922 CAGAAATTATYGAGTACACCAGCCACGATGAGGTAGCGGTGTGTAATCTGGCCTCAATTG 41863 Query 76059 CCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACT-TCA--TG 76115 | || | ||| |||| ||| || |||||||| | | ||||||| || || Sbjct 41862 CGCTCAACATGTACGTCACCCCGGAG---CGGACTTTTGACTTTAAAAAACTGGCATCTG 41806 Query 76116 AAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCG 76175 | || | || || ||| ||| | ||| ||||| || | || | ||||| | Sbjct 41805 TGACCAAAGTAATCGT---CAAGAATTTGAACAAGGTCATCGAAATTAACTACTATCCAG 41749 Query 76176 TTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTC 76235 | ||| |||||| || | ||| ||||| || ||||| | || || |||||| Sbjct 41748 TGCCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTT 41689 Query 76236 TCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGA 76295 | ||||||| || || | || ||| | || || | || || || | ||| Sbjct 41688 TGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCAAAGAGGCTCAGCTGCTGA 41629 Query 76296 ATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTG 76355 || || ||||| || |||| || ||||| ||||||||||||| || || |||| | Sbjct 41628 ATATTCAAATCTTCGAGGCCATCTACCACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCG 41569 Query 76356 AAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC-CCAAGGG-GTGCTTCA 76413 | | || |||| ||||| | | || ||||| |||| |||||| | || || Sbjct 41568 CCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCC--CGTCAGCAAGGGCATCCTGCA 41511 Query 76414 GTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GACTGGGATGTTCTCAAGGAA 76471 || || ||||||| || ||| || | | |||| | |||||| | | || ||||| Sbjct 41510 GTACGACATGTGGG-AGAAGAAGCCCA-CCGAACTGCTGGACTGGAAGCTGCTGAAGGAG 41453 Query 76472 CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCC 76531 ||| | || | | ||||| || || |||| || ||||| || |||||| Sbjct 41452 AAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCC 41393 Query 76532 ACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTG 76591 ||||| || ||| |||| || || || | | | ||| | ||||| | ||||||||| Sbjct 41392 ACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACC 41333 Query 76592 AGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAG 76651 | || |||| | || |||||| || |||||| || || |||| ||||| | | Sbjct 41332 CGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACG 41273 Query 76652 AAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||| || || ||| | |||| |||||| Sbjct 41272 GAGAGAGGGCTGTGGAGCGAGGAGATGAAG 41243 >seq1 Length=4870262 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 75875 GTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAG 75934 || ||| | || || || |||| ||||| || || || || ||||| ||||| |||||| Sbjct 4203038 GTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAG 4202979 Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 || || || |||| |||||| ||||| ||||| |||| || ||||| | ||||| Sbjct 4202978 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 4202919 Query 75995 TGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||||||| || ||||||||||| ||| |||||| Sbjct 4202918 TGCACGGAGATCGTAGAGTACACAAGTAAAGATGAG 4202883 >seq4546 Length=26461 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCT 65136 ||||| || | || |||||| |||||||| |||||||||||||| |||||| || Sbjct 23565 GAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 23506 Query 65137 ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATT 65196 || | |||| | |||||| | || || ||||| ||||| || ||| || || || ||| Sbjct 23505 ATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 23446 Query 65197 TCCCGAGATGAGG 65209 || ||||||| Sbjct 23445 AGTCGGGATGAGG 23433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596491382268320