Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq36 140 4e-27 seq1 104 3e-16 seq3303 102 1e-15 seq4546 87.8 2e-11 >seq36 Length=1390544 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||| ||||| ||||||||||| | | | || Sbjct 2850 GCTTGGCCAGCTCACCGGGCAGCAGCAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGA 2909 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||||||| |||||| | ||||||| || | | Sbjct 2910 TGGTGGAACGCTTGTTGTAGTGAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGA 2969 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| | || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 2970 TGTCGCTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 3029 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| | ||| ||||| Sbjct 3030 GCACCTGCTTCATCACTTTGTA 3051 >seq1 Length=4870262 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||| ||| || | | || ||||| |||||||||||| | || Sbjct 4202905 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 4202964 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||| |||| |||||| ||| |||||| ||| | Sbjct 4202965 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 4203024 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 4203025 ATGGCGTACCACACCTG 4203041 Score = 89.7 bits (98), Expect = 6e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1627347 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTC 1627406 ||| || ||||||||||| | ||| |||||||||||| ||||| | |||| | ||| Sbjct 4201938 AAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATGGACTC 4201997 Query 1627407 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAG 1627460 | |||||||||||||||| | || | || ||||||||| | |||| ||| || Sbjct 4201998 GTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAG 4202051 >seq3303 Length=47767 Score = 102 bits (112), Expect = 1e-15 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||||| |||| ||| || ||||||| | ||| || | Sbjct 41257 TCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 41316 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | ||||| || | ||| |||||||||||| ||||| | | ||| | |||| |||||| Sbjct 41317 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 41376 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | |||||||||||| | |||| || || ||| | || || Sbjct 41377 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 41436 Query 1627475 CGTG 1627478 |||| Sbjct 41437 CGTG 41440 Score = 86.0 bits (94), Expect = 8e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 1628378 AGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCA 1628437 ||||||||| ||| || || |||| ||||| | || |||||||| | | || Sbjct 42124 AGCACTCGTCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCT 42183 Query 1628438 CCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGT 1628497 || | | ||| || ||||| ||||||| |||| || ||||| | || | | Sbjct 42184 CCACTCTCTTCATGAACAGGTCGGGRATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCT 42243 Query 1628498 TCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACG 1628557 ||||||||| ||| |||||| || || || || |||| | | |||||||||||| | Sbjct 42244 GCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGG 42303 Query 1628558 GCTCCAGGTAGCAGGCAAAGGCGCC 1628582 |||||||||| ||| ||||| || Sbjct 42304 GCTCCAGGTACATGGCGAAGGCTCC 42328 >seq4546 Length=26461 Score = 87.8 bits (96), Expect = 2e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 || || ||||| |||| |||||| ||| ||||| ||||| || || | ||||||| Sbjct 23435 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 23494 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 |||||||||||||| ||| ||| ||||| ||||||||||| || || ||||| Sbjct 23495 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAA 23550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106278423540013