Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3303 163 3e-35 >seq3303 Length=47767 Score = 163 bits (180), Expect = 3e-35 Identities = 495/760 (65%), Gaps = 24/760 (3%) Strand=Plus/Plus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||| ||| || | ||||| ||| | || |||||| || |||| | || | || Sbjct 41275 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGG 41334 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | | || | || |||||||| ||||| ||||| || |||| Sbjct 41335 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 41394 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTT 138658 || || ||||| |||| || || |||| | ||||| | ||| | Sbjct 41395 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCT 41454 Query 138659 CCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTA 138718 |||| ||| | ||||||| || ||| | || || || | |||||| |||||||| | Sbjct 41455 CCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCA 41514 Query 138719 ACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCA 138778 || ||| || ||||| |||| |||||| ||||| || | ||| |||| Sbjct 41515 GGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCA 41574 Query 138779 ACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCA 138838 |||| ||||||||| || || | | ||| || | ||| || || ||| |||| Sbjct 41575 GCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCA 41634 Query 138839 ATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTT 138898 | ||||| ||| ||| |||| || | | |||| || || |||| |||| Sbjct 41635 GCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTT 41694 Query 138899 GCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAG 138955 | ||||| | ||| | || | |||||| || ||| ||| | |||||| | | Sbjct 41695 GGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGAC---TTTTCCGCTTCGGGCACTG 41751 Query 138956 GATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTA--TG 139013 |||| ||||| | ||||||| ||||| ||||| |||| || || ||| | || Sbjct 41752 GATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATG 41811 Query 139014 CTTTAATCGTTCAAAATCGTATGTGCCC-CCGTTGTCGTCGACGACGTCGACAAATTTGT 139072 | | | || ||| || | || | | ||| || ||||| ||| ||| Sbjct 41812 CC--AGTTTTTTAAAGTCAAAAGTCCGCTCCGGGGT-------GACGT--ACA----TGT 41856 Query 139073 TGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAA 139132 ||| ||| ||||| | || |||||||| || || ||| || | |||| || | || Sbjct 41857 TGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAA 41916 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 |||| | || | || || ||||||| || || | ||| ||||| ||||| || | || Sbjct 41917 TTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGT 41976 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 | || || |||||||| ||||| || || ||||||||||| Sbjct 41977 TGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTC 42016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449838612800920