Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq36 188 1e-41 seq369 136 6e-26 seq3303 98.7 2e-14 seq1 93.3 7e-13 seq5574 91.5 2e-12 seq4546 89.7 8e-12 >seq36 Length=1390544 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||||||||| || ||||||||| ||||||| || ||| ||| Sbjct 2811 TGTACTTGGTCACGGCCTTGGTACCCTCAGACACGGCGTGCTTGGCCAGCTCACCGGGCA 2870 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||| ||||||||||| | || | ||| ||| |||||||| | Sbjct 2871 GCAGCAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGT 2930 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| ||| |||||| | ||||||| || | |||||| | || || ||||||| Sbjct 2931 GAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATGTCGCTCACGAAGGAGTTCA 2990 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| | ||| |||| Sbjct 2991 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTGCTTCATCACTTTGT 3050 Query 1485710 AAAC 1485713 | || Sbjct 3051 ACAC 3054 >seq369 Length=533585 Score = 136 bits (150), Expect = 6e-26 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 207442 TGTACTTGGTGACAGCTTTGGTTCCCTCGGACACGGCGTGTTTGGCCAGCTCCCCGGGCA 207383 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | |||||||||||| | ||| | | || ||| ||| ||| || || || | Sbjct 207382 GCAGCAGCCTCACGGCGGTCTGCACCTCTCTGCTGGTGATGGTGGAGCGTTTATT-GTAC 207324 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| ||||||||| |||| || || | || |||||| || || |||||| Sbjct 207323 TGAGCCAGCCGGGACGCCTCGGTGGCGATCCGCTCAAACAGGTCGTTCACGAAGGAGTTC 207264 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||| | | | |||| |||||| ||| | || ||||| Sbjct 207263 ATGATGCTCATGGCTCGGCTGGAAATGCCCGTGTCCGCATGAACCTG 207217 >seq3303 Length=47767 Score = 98.7 bits (108), Expect = 2e-14 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 2071791 GCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCAC 2071850 |||||||| ||| || || |||| || || | || |||||||| || || | Sbjct 42125 GCACTCGTCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTC 42184 Query 2071851 CACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTT 2071910 ||| | ||| ||||||||| ||||||||||||| || || || | || | | Sbjct 42185 CACTCTCTTCATGAACAGGTCGGGRATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTG 42244 Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 ||||||||| ||| |||||| || || || || |||| | | |||||||||||| || Sbjct 42245 CTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGG 42304 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCC 2071994 ||||||||| ||| ||||| || Sbjct 42305 CTCCAGGTACATGGCGAAGGCTCC 42328 Score = 96.9 bits (106), Expect = 5e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 ||||||| || | | || ||| | | || ||| || ||||||| | ||| || | Sbjct 41257 TCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 41316 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| || | ||| |||||||||||||| ||| | | ||| | |||| |||||| Sbjct 41317 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 41376 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 |||||||||| | || | |||||||||||| | |||| ||||| ||| | || || Sbjct 41377 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 41436 Query 2069744 CGT 2069746 ||| Sbjct 41437 CGT 41439 >seq1 Length=4870262 Score = 93.3 bits (102), Expect = 7e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTC 2069675 ||| || ||||||||||| | ||| |||||||||||||| ||| | |||| | ||| Sbjct 4201938 AAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATGGACTC 4201997 Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 | |||||||||||||||| | || | || ||||||||| | |||| |||||| Sbjct 4201998 GTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAG 4202051 Score = 93.3 bits (102), Expect = 7e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||| ||| || | |||||||||| |||||||||||||| || Sbjct 4202905 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 4202964 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| ||||||||||| |||||||| |||| || || ||| |||||| || | Sbjct 4202965 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 4203024 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 4203025 ATGGCGTACCA 4203035 >seq5574 Length=15043 Score = 91.5 bits (100), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || ||||||||| | ||||| || ||| ||| Sbjct 8404 TGTACTTGGTCACAGCCTTGGTTCCCTCAGACACGGCGTGCTTTGCCAGCTCACCGGGCA 8463 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 | |||||| || |||||||||||||| Sbjct 8464 GCAGCAGGCGGACAGCGGTCTGGATCTC 8491 >seq4546 Length=26461 Score = 89.7 bits (98), Expect = 8e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| | || ||||| |||| |||||| || ||||| ||||| || || | || Sbjct 23431 CACCT-CATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCT 23489 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||||||||||||||| ||| ||| ||||| ||||||||||| || || |||| Sbjct 23490 TCTTGAGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAA 23549 Query 794459 A 794459 | Sbjct 23550 A 23550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915130637229671