Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq287 107 1e-17 seq415 95.1 9e-14 >seq287 Length=613563 Score = 107 bits (118), Expect = 1e-17 Identities = 118/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 |||||| ||||| || || ||||| || | |||||||| ||||||||||| || || Sbjct 483843 TTGTCTACCTTTTTGTCCAGCCCATAGGCGATGGCAGCAGCTGTTGGTTCATTGATGATA 483902 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | || |||||| || |||| ||| | || |||||||||||||| || | || || || Sbjct 483903 CGCAGAACATTGAGGCCAGAGATTGTGCCAGCATCTTTAGTGGCCTGGCGCTGGGAGTCA 483962 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTT 282478 || || || ||||| || ||||| || |||| |||| Sbjct 483963 TTGAAGTAGGCAGGTACCGTAATTACAGCAT-TGTT 483997 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| || ||||| || || | ||| | || | |||||||||||||| ||||| Sbjct 488091 CAAAAACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCTTGGCTGCATCTCCGATCAGCC 488150 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || | ||||| || | ||||| || || || | || ||||| || || |||| Sbjct 488151 TCTCCGAATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTTCCTTGGTCGTTGGCAA 488210 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| ||| | ||||| ||||| | | || || || | ||| | Sbjct 488211 TGATTTCAACTTTGCCATGTTGGAACACACCAACACAGGAATAGGTGGTCCCGAGATCGA 488270 Query 282870 TACCAA 282875 |||||| Sbjct 488271 TACCAA 488276 >seq415 Length=537748 Score = 95.1 bits (104), Expect = 9e-14 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 |||||||| || || ||||| | |||||||||||| || || || || || | | ||| Sbjct 50357 TTTTTATCCAGGCCGTACGCGATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGGACA 50416 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 50417 TTAAGCCCAGAAATGGTGCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 50476 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| ||||| | || |||| |||| Sbjct 50477 GCAGGCACAGTCACGACTGCAT-TGTT 50502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740115434426514