Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3303 226 3e-54 seq1 120 3e-22 >seq3303 Length=47767 Score = 226 bits (250), Expect = 3e-54 Identities = 634/966 (66%), Gaps = 19/966 (2%) Strand=Plus/Plus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||||| | || || | ||||||||| |||| ||| || | || Sbjct 41275 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGG 41334 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | ||| | |||||||||||||||| ||||| ||||| | Sbjct 41335 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 41394 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||||||||| || | |||||| ||| | || ||| | | || || Sbjct 41395 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCT 41454 Query 148417 GCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| | ||||||| ||| ||| | || || | ||||||||||||||| Sbjct 41455 CCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTG--GGCTTCTTCTCCCACATGTCGTACTG 41512 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 ||| ||||| ||| |||| ||| |||||| ||| || ||| || | || || Sbjct 41513 CAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGC 41572 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| |||||||||||||| || ||| ||| ||| || | |||| ||||| | || || Sbjct 41573 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAG 41632 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| ||| | ||||||| |||| ||||| | | || || || || | || Sbjct 41633 CAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACC 41692 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712 || ||||| | ||||| |||| ||| ||||||| ||| ||| || Sbjct 41693 TTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGC---TTCGGGCAC 41749 Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTC 148770 ||||||| ||| ||||||| ||||| | ||| || | || || || | Sbjct 41750 TGGATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGA 41809 Query 148771 TGCGCAGCAATTCAAAATCGTACTTGTCATCTAC-----GATGCATCGGTTCACGGCGAT 148825 ||| ||| || ||| || | ||| || | || | | ||| | || || Sbjct 41810 TGC-CAGTTTTTTAAAGTC--AAAAGTCCGCTCCGGGGTGACGTACATGTTGAGCGCAAT 41866 Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885 ||||| ||||| ||||| || |||||| || | ||||||| | || || | ||| Sbjct 41867 TGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTTCTGTGCA 41926 Query 148886 CAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTC 148945 || |||||| | ||||| ||||| |||| ||| |||||||| |||||||| ||||| Sbjct 41927 GAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTC 41986 Query 148946 CTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAG 149005 |||||||||||||| || ||||||||| ||| | || | | | | || Sbjct 41987 TTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAA 42046 Query 149006 GTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065 | ||| || ||| ||| | | |||| || ||| || | || || ||| Sbjct 42047 CTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTT 42106 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 |||||| |||| || |||| ||||| || || ||||||| || || ||||| || || Sbjct 42107 TTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCTGGGCACTCGTTGGGACACATCAGAGA 42166 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 ||| | ||| | ||| | |||||| ||||| ||||| | ||| || |||| | Sbjct 42167 CCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGRATCCACAGGCCGTAGAA 42226 Query 149186 GAGGTC 149191 ||||| Sbjct 42227 AAGGTC 42232 >seq1 Length=4870262 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| |||| || | Sbjct 4202897 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 4202956 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||| |||||||| ||||||||||| |||||||| || ||| ||||| ||||| Sbjct 4202957 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCG 4203016 Query 148984 TTTC 148987 ||| Sbjct 4203017 ATTC 4203020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483357417490360