Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq645 120 4e-22 seq206 84.2 3e-11 >seq645 Length=347159 Score = 120 bits (132), Expect = 4e-22 Identities = 357/538 (66%), Gaps = 25/538 (5%) Strand=Plus/Minus Query 176945 GGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 |||||| || | || || ||| |||||| |||||| ||||| ||||| ||| ||| | Sbjct 289044 GGCCAGCTCCTTGGGCGAGGTGAAGTCGTCCACGTGGATGAAGGCGTCCCCCTGGATAAA 288985 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGA 177064 || ||||| |||| | | | || || || | || |||| || | ||||| Sbjct 288984 RTTCTCGTAGTTCTGCCGGGGCGGGCCCAGAACCACCGGCACCGTCCCGAC----AGAGA 288929 Query 177065 TCGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGAT 177120 ||| || ||||| || || || |||||| |||| | |||||||||||| || || | Sbjct 288928 GCGGGTTGTACAGTTTCTCAGTGATGTAGTCCTTGTGGATGGAGTTCTCAAAAGCCAGGT 288869 Query 177121 AGAATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTAC 177178 |||| || ||| | ||| || |||| | |||| | || | || || || || | Sbjct 288868 AGAACTTGCAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCCGAGATGTACTCCCCGAA 288811 Query 177179 TACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCT 177238 | | ||||| | || | || ||||| || ||||| ||||||| || | Sbjct 288810 GGCTTGTCCGTACGCGTGAACCTCGATGTGCTTGTACAGCTCATTGTAGTATTTCACCCG 288751 Query 177239 CACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAAC 177298 ||||||||| | |||||| ||||| |||| |||||| | | |||| | ||||| || | Sbjct 288750 CACGTGGTCCTGGTTCCAGTTGCTCACGATCCAGCAGATCAGCTTG-TTTTTGCTGG-GC 288693 Query 177299 GGGATTCGATACTAAT-GCAGTGTCTCTG-AGCGTTAGTGATCCATAGGGCACGTGAATA 177356 |||| | || || || | | ||| || | || ||||| ||||| | ||| Sbjct 288692 GGGACAAAGTCCTCATCGCCCT-CCGCTGCTACG--ATGGACCCATAAGGCACTTCAATG 288636 Query 177357 TCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC---TTGTTTG 177413 || | || | | ||| | | || |||||||| | ||| || || || | | | Sbjct 288635 TCAGCATCCTGACGGTAATTGAGAGTCAGATTGAACATGTTCTCGATCCCGGGCAGCTGG 288576 Query 177414 AAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTC 177471 ||| | || || ||||| || ||||||||||||| |||||| || |||| ||||| Sbjct 288575 GAGGAG-TGCGAC--GGCGACTCCAAGTTCATCCATACCCACTTCTGGAAGGATGGTC 288521 >seq206 Length=747813 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 162226 TACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATA 162285 ||| |||| |||| | |||||| || || | | |||||| || | | || ||| Sbjct 3795 TACGGGGCTCCATGTTTCACATCTCCTTCTAAATCGCTCCACTTCACCACACGAGCGATG 3736 Query 162286 GCCTGCATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGC 162345 ||||||| ||| || || ||||||||| | | || | | ||| |||||| ||| Sbjct 3735 GCCTGCAAGTCTGATGTATCGTACTTGGAGTGGGCTGGTATTGATCCGGGAACAGAGGGC 3676 Query 162346 AGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCC 162405 | ||||||||||| ||||||| ||| || || || || || || ||| || ||||||| Sbjct 3675 ATCCTCTGTAGAGTGGCCCACAAGTGCTCATCGGGGCTGTATGTGTCCCTCTCCCACTCC 3616 Query 162406 A 162406 | Sbjct 3615 A 3615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578356160334400