Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq36 140 5e-27 seq369 107 3e-17 seq1 104 3e-16 seq3303 95.1 2e-13 >seq36 Length=1390544 Score = 140 bits (154), Expect = 5e-27 Identities = 169/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||| | ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 3051 TACAAAGTGATGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 2998 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || | |||||| | || ||||||| | |||||| || Sbjct 2997 GGCATCATGAACTCCTTCGTGAGCGACATCTTTGAGCGCATCGCCGGTGAGGCCTCCCGT 2938 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | ||||||||||| ||||| ||| Sbjct 2937 CTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACGGCCGTCCGC 2878 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 2877 CTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGTACCA 2829 >seq369 Length=533585 Score = 107 bits (118), Expect = 3e-17 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || || |||||| || | || || |||| ||||||||| Sbjct 207251 CCATGAGCATCATGAACTCCTTCGTGAACGACCTGTTTGAGCGGATCGCCACCGAGGCGT 207310 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| | | ||| || ||| ||| ||| || | ||| | |||||||||| Sbjct 207311 CCCGGCTGGCTCAGTACAATAAACGCTCCACCATCACCAGCAGAGAGGTGCAGACCGCCG 207370 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| | ||| ||| || ||||||| |||||||| |||||||| |||| Sbjct 207371 TGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGAACCA 207424 >seq1 Length=4870262 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | || | ||| ||||||||||| |||||| ||||| Sbjct 4203041 CAGGTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTAC 4202982 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 ||||||||| |||| || |||||||||||||| |||||||||| | | ||| Sbjct 4202981 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAAT 4202922 Query 262211 CTGTGCACCGAGATCGT 262227 |||||||| |||||||| Sbjct 4202921 CTGTGCACGGAGATCGT 4202905 Score = 96.9 bits (106), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| || | || | |||||||||||||||| |||| | Sbjct 4202050 TGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATCCTGGGCAACAACGAGTCCA 4201991 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||| | ||| |||||||||||||| ||| | ||||||||||| || ||| Sbjct 4201990 TTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTT 4201938 >seq3303 Length=47767 Score = 95.1 bits (104), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||| | |||||||||||| | || | |||||||||||||||| |||| | Sbjct 41421 TGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 41362 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||| | | ||| |||||||||||||| ||| | || ||||| || || ||| | | Sbjct 41361 TCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCG 41302 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||||| || ||| |||| | || || | | || ||||||| Sbjct 41301 TCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGA 41257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176799516671218