Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3303 102 8e-17 seq1 98.7 1e-15 >seq3303 Length=47767 Score = 102 bits (112), Expect = 8e-17 Identities = 455/714 (64%), Gaps = 19/714 (3%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||| ||||||| | || | ||||| || | ||| |||||||||||||||||||| || Sbjct 42038 CGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACATGCTGTACAAAGACGCCTG 41979 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| ||| || |||||||||| | |||||| || ||| | || Sbjct 41978 CAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGA 41919 Query 8352 AATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTT 8411 |||| | |||||| | | ||| || || || || || ||||| || || | | Sbjct 41918 AATTATYGAGTACACCAGCCACGATGAGGTAGCGGTGTGTAATCTGGCCTCAATTGCGCT 41859 Query 8412 AAACGCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCC 8469 ||| || ||| || | | | |||| |||||| || || || | | Sbjct 41858 CAACATGTACGT-----CACCCCGGAGCGGACTTTTGACTTTAAAAAACTGGCA---TCT 41807 Query 8470 GTG---CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTG 8526 ||| |||| | || ||||| | |||| || | || | ||||| || Sbjct 41806 GTGACCAAAGTAATCGTCAAGAATTTGAACAAGGTCATCGAAATTAACTACTATCCAGTG 41747 Query 8527 GAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTG 8586 |||||| || |||| ||||||||| || |||| | ||||| |||||| || Sbjct 41746 CCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTTTG 41687 Query 8587 GCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAAC 8646 || || || || | | |||| ||| | ||||||| |||| || | |||| || Sbjct 41686 GCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCAAAGAGGCTCAGCTGCTGAAT 41627 Query 8647 ATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGA 8706 || |||| || | | || ||| ||| | || || ||||| | || ||| Sbjct 41626 ATTCAAATCTTCGAGGCCATCTACCACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCC 41567 Query 8707 GAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATAC 8766 || | ||| | ||||| ||||||| ||| || | |||| || || |||| ||| Sbjct 41566 GAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCCCGTCAGCAAGGGCATCCTGCAGTAC 41507 Query 8767 GACATGTGGAATGTCACGCCCACCTCTTTG-TGGAATTGGAGCGATTTGAAACGCAAAAT 8825 ||||||||| | | ||||||| || |||| | | ||| |||| || || Sbjct 41506 GACATGTGGGAGAAGAAGCCCACCGAACTGCTGGACTGGAAGC-TGCTGAAGGAGAAGAT 41448 Query 8826 TGC--TCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACT 8883 || || | ||| || | || ||| || |||| |||||||| ||| | || Sbjct 41447 CGCCATCCA--CGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACC 41390 Query 8884 GCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || || || |||| |||||||| ||| | || | | ||||| |||| | ||| Sbjct 41389 GCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTAC 41336 >seq1 Length=4870262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| ||||||| || | ||||||||| | ||| |||||||| ||||| ||||| || Sbjct 4203030 CGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAGGACGCCTG 4202971 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || || |||||||||| | ||||||||||||| | || Sbjct 4202970 CAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGA 4202911 Query 8352 AATTGTACAGTACA 8365 || ||| |||||| Sbjct 4202910 GATCGTAGAGTACA 4202897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505332135952280