Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1675 105 5e-18 seq2317 104 2e-17 >seq1675 Length=151170 Score = 105 bits (116), Expect = 5e-18 Identities = 101/127 (80%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| |||||||| || ||| ||| |||||||||||| |||||| || |||||| Sbjct 14433 CCAGACGACCTCCAGTTCTGCATTCAGTCGGTCCAGCTTCACAAAGTCGTCTTTGTTGGT 14374 Query 77371 AA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||||| ||| | ||||| |||||||||| ||||||||||||| ||||| | | Sbjct 14373 GATCTGACC-TCCAGATTTCAGCCGCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGGTGG 14315 Query 77430 TCACACC 77436 ||||||| Sbjct 14314 TCACACC 14308 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| ||||| |||||| ||||||| ||||||| |||||||||||| || |||||||| | Sbjct 14216 CACCGTTGATCGTGAACTTGCTGTCGGTGTAGAGGACCAGCTTCTTTATGTTGTTCTCTT 14157 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| |||||| | ||||||||| Sbjct 14156 TGGCTTGTTCCAGCGCTTTGCAGGCAGCCTGG 14125 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||| |||||||||||||||| ||||| ||||||||||| || ||| || | Sbjct 13036 CTCCTCTGAAGAACGCCCAGGCATCTTTCTCTGACGCAAACTTCTTGAAAGAGGCAGCGG 12977 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | |||||||| || ||||||||||||||||||| Sbjct 12976 GAAATTTGTCCACCTGGCTCTTACATTCATCCC 12944 >seq2317 Length=117494 Score = 104 bits (114), Expect = 2e-17 Identities = 103/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 87316 CATGCAAACAATC---CTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAG 87372 |||| ||||| || ||||||||||||| || || ||| |||| || || || || ||| Sbjct 46809 CATGAAAACACTCACCCTGCTCCCAGTTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAG 46750 Query 87373 ACTGTCAAGCCAGCAAACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTAT 87432 ||||||| ||||||||||||||||| || | | | | ||| || | ||||||||| Sbjct 46749 ACTGTCAGTCCAGCAAACACAGCACAGGTCAGGCACAAGGCTTGCAGGACAGTGGAGTAT 46690 Query 87433 TCATAGAAGGTCA 87445 || |||||||||| Sbjct 46689 TCGTAGAAGGTCA 46677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397405191336445