Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3303 219 5e-52 seq1 102 1e-16 >seq3303 Length=47767 Score = 219 bits (242), Expect = 5e-52 Identities = 653/990 (66%), Gaps = 25/990 (3%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 41243 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 41302 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| || | ||||||||| | ||||| | ||| | Sbjct 41303 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 41362 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 41363 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 41422 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | ||| ||||| || | | |||||| | |||| Sbjct 41423 GCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTT- 41481 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTG-GGACGCGGGAGAAC 110909 | | || ||| | ||||||||||| |||| || | |||||| || ||||||| | Sbjct 41482 CGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGA--CGGGAGAGC 41538 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | | | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 41539 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 41598 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 |||| || |||| || ||||| || ||||| | || || || | || || | Sbjct 41599 CGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACG 41658 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || ||||||| | |||||| || || | ||||| || |||| Sbjct 41659 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 41718 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 | ||| | || |||||| ||| || ||||| | || | || ||||| || Sbjct 41719 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGT 41778 Query 111150 TTAGATTTTTGGTAACAAT--CTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGC 111206 | | ||| ||| || || ||||| ||| ||||||| | | |||||||| | Sbjct 41779 TCAAATTCTTG---ACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCC 41835 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | ||| |||| ||| | || || ||||| |||| ||| || || || || Sbjct 41836 G---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCT 41892 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 |||| | |||||||| | ||||||||| || | |||| ||| || || |||| Sbjct 41893 CATCGTGGCTGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCA 41952 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||| |||||| |||||| ||||||| || || ||||| |||||||| ||||| || | Sbjct 41953 GATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAG 42012 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTG 111445 | || ||||| || | || || || | ||| ||| | | | || || | | ||| Sbjct 42013 TTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCT-TCACCACGCGCTTG 42071 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 111504 | |||| | ||| || |||||||| ||| |||||||| ||| | || || Sbjct 42072 AACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTC-CCCCCAGCACTC 42130 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACC 111562 | || ||||| || || ||||| | |||||||| | || | || ||| || Sbjct 42131 GTCCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCA--GTCCTCGTTGCTCTCCACT 42188 Query 111563 CGCTTCATGAAAAGGTCTGGAATCCACAGG 111592 | ||||||||| ||||| || ||||||||| Sbjct 42189 CTCTTCATGAACAGGTCGGGRATCCACAGG 42218 >seq1 Length=4870262 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| ||| ||||||||||| || || || || | ||| || || || || Sbjct 4202883 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCC 4202942 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||||| ||||| |||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 4202943 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCC 4203002 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAAC 111420 || || ||||| |||| || || || | ||| || Sbjct 4203003 GGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 4203038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627949657154400