Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3303 168 8e-37 seq1 86.0 8e-12 >seq3303 Length=47767 Score = 168 bits (186), Expect = 8e-37 Identities = 600/917 (65%), Gaps = 35/917 (4%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 41337 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 41396 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 41397 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCC 41456 Query 118302 TTGAG-AGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358 || || ||| ||| |||| | |||| | | | || | || |||||| || |||| Sbjct 41457 TTCAGCAGCTTCC-AGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGTACTGC 41513 Query 118359 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 ||||| || | | |||| || || || | | ||||| || ||||| | | | Sbjct 41514 AGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGG 41571 Query 118417 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA 118476 ||| ||| |||||||||| ||||| ||||| || || | || || || || ||||| Sbjct 41572 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCA 41631 Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536 || ||||| | | || |||| | || | || || ||||||| | || Sbjct 41632 GCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAAC 41691 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT--CCGAG-CGGTCTCCA 118593 ||||||| || | ||||| || | || | | | || ||||| ||| ||| | | Sbjct 41692 CTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGC---A 41748 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 118653 | ||||| | || | ||||| ||| | || | ||| ||| || || || || | Sbjct 41749 CTGGATAGTAGTTAATTTCGATGACCTTGTTCAAATTCTTGACGATTACTTTGGTCACAG 41808 Query 118654 CATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712 ||| || |||| | |||||| | || ||| |||| ||| | || || Sbjct 41809 -ATGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGCGCA 41864 Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772 ||||| |||||||||||||| | |||||| | |||||||| |||||||| ||| Sbjct 41865 ATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCRATAATTTCTGTG 41924 Query 118773 CACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 || | ||| || | ||| |||||||||| |||| ||| || ||| |||| || | Sbjct 41925 CAGAGGTTGCTGGA--CTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGG 41982 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | || ||||| |||||||||||||| || || || || ||||||| || || || | || Sbjct 41983 CGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGGACTCGATAACGGCGTGCC 42042 Query 118891 AGACATCGGC--AGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 ||| | || ||| ||| | ||| ||||| | ||| || ||||| Sbjct 42043 --ACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTA 42100 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| ||| ||||| || ||| | ||| |||||||| || | || || | Sbjct 42101 GAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCTGGGCACTCGTTGGGACACAT 42160 Query 119009 GAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 |||||||| | || | | ||| || | ||||||||| ||||| || ||||| || Sbjct 42161 CAGAGACCA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGRATCCACAG- 42217 Query 119067 GCCG-AGAAGAGATCCC 119082 |||| |||| || |||| Sbjct 42218 GCCGTAGAAAAGGTCCC 42234 >seq1 Length=4870262 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| || || ||||| Sbjct 4201966 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 4202025 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| || ||||| Sbjct 4202026 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 4202057 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 |||||| ||| |||||||||| || |||||||||| || || | | | |||||| Sbjct 4202883 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 4202940 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| |||| || || ||| |||| || || |||||||| |||||||||||||| Sbjct 4202941 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 4203000 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 || || || || || || | || || || | ||| || Sbjct 4203001 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 4203038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618354115414840