Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3303 149 7e-31 seq4546 87.8 2e-12 seq1 82.4 9e-11 >seq3303 Length=47767 Score = 149 bits (164), Expect = 7e-31 Identities = 646/1004 (64%), Gaps = 25/1004 (2%) Strand=Plus/Minus Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 || || |||| || || ||||| || || || |||||||||||||| ||| | | Sbjct 42232 GACCTTTTCTACGGCCTGTGGATYCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAG 42173 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGA 104817 | |||||||| | ||||| || || || || || ||| ||| | ||| ||||| Sbjct 42172 GACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGCTGGACGAGTGCTGGGGG-GAGGA 42114 Query 104818 GTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG--CGACTGCGACGGTGCCA 104875 ||| ||| || ||||| || ||| ||| ||| | | | ||| |||| Sbjct 42113 GTTCGAAAAGCTCTACACCTCCTATGAG-AAGCAGGGGAAGTTCAAGCGCGT-GGTGAAG 42056 Query 104876 GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 ||| | ||||| | || || || |||| || || || ||||| || ||||||||| Sbjct 42055 GCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACATG 41996 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 || |||||||||||||| ||| ||||| || ||| ||||| |||| |||||| Sbjct 41995 CTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCC 41936 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 ||| ||||| |||||||| | || | || | | |||||| || |||||||| Sbjct 41935 AGCAACCTCTGCACAGAAATTATYGAGTACACCAGCCACGATGAGGTAGCGGTGTGTAAT 41876 Query 105056 CTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAA 105115 || || ||||| || ||| || ||| || || ||| ||| ||||| | | || Sbjct 41875 CTGGCCTCAATTGCGCTCAACATGTACGTCACCCCGGAG---CGGACTTTTGACTTTAAA 41819 Query 105116 AAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAAT 105175 ||||| || || ||| || ||| || | |||| || || || | || Sbjct 41818 AAACTGGCATCTGTGACCAAAGTAATCGTCAAGAATTTGAACAAGGTCATCGAAATTAAC 41759 Query 105176 TTTTACCCCGTTGAGACTG-CTCGTAAA--TCTAATATGAGACACCGTCCAATTGGTCTC 105232 | || || || | | | || ||| || || | | | ||| | || ||||| | Sbjct 41758 TACTATCCAGT---GCCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATT 41702 Query 105233 GGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA 105292 || || || ||| | ||||||| ||||| || || || | || || | | || Sbjct 41701 GGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCAAAGAG 41642 Query 105293 GCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGT 105352 || || | ||| | || || ||| |||| || |||||||| || |||||||| Sbjct 41641 GCTCAGCTGCTGAATATTCAAATCTTCGAGGCCATCTACCACGCCGCCCTGGAGGCGAGC 41582 Query 105353 TCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CA 105411 | ||| |||| | | || || || || || | | || ||||| | ||| || Sbjct 41581 TGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCC--CGTCAGCA 41524 Query 105412 AGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC--GACTGGGA 105468 |||| | || || | || |||||||| || ||| | ||| | |||| ||| Sbjct 41523 AGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGCCCA--CCGAACTGCTGGACT-GGA 41467 Query 105469 AGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAA 105527 |||| || ||||| ||| | || | | ||||| || || |||| || | Sbjct 41466 AGCTGCTGAAGGAGAAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGA 41407 Query 105528 TGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGA 105587 |||| || ||||||||||| || ||| |||| || || || | | | ||| ||||||| | Sbjct 41406 TGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCA 41347 Query 105588 CGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCG 105647 |||||||| | || |||| | ||||||||| ||| |||||| ||||| Sbjct 41346 GCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGC 41287 Query 105648 TGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | | ||||| | |||| || || ||| | |||| |||||| Sbjct 41286 TCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAG 41243 >seq4546 Length=26461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||| | | || |||||| || ||||| ||||||||||| || || ||| || Sbjct 23565 GAGCGAATTGTGGCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCC 23506 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | ||||||||||||| |||| || ||||| || || || |||||||||||| || Sbjct 23505 ATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATT 23446 Query 94924 TCTCGTGACGAGG 94936 ||| || |||| Sbjct 23445 AGTCGGGATGAGG 23433 >seq1 Length=4870262 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 |||||||| ||| |||| || ||||| ||||| ||||||||||| ||| |||| || || Sbjct 4202057 AACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATCCTGGGCAACAAC 4201998 Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 || | | |||| ||||||| | |||||||| | || ||| ||||||||||| Sbjct 4201997 GAGTCCATTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTT 4201938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583184327218360