Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1409 132 1e-25 seq287 132 1e-25 seq358 104 7e-17 seq3065 102 2e-16 seq415 100 9e-16 >seq1409 Length=198976 Score = 132 bits (146), Expect = 1e-25 Identities = 414/636 (65%), Gaps = 5/636 (1%) Strand=Plus/Plus Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 |||||||| || || || || || || ||||| || || || ||||| || || || Sbjct 156025 GTAGAAATCATCGCCAACGACCAGGGCAACAGGACCACCCCCAGCTACGTGGCGTTCACT 156084 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||| | | || || || | || || || || | ||| || || | || Sbjct 156085 GACACAGAGAGGCTCATCGGGGACGCAGCCAAGAACCAGGTGGCTTTGAACCCCAGCAAC 156144 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || |||||||| ||| |||| ||||| |||| || ||| | || | Sbjct 156145 ACCGTGTTTGATGCCAAGAGACTGATTGGAAGAAAGATTGATGATGCAGTGGTGCAGGCG 156204 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || |||| || || | || | || | ||||| | || || | ||| | Sbjct 156205 GACATGAAGCATTGGCCCTTCAAGGT-GATCGGA--GACGGAGGGAAGCCCAAAATTCAA 156261 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558 || || | ||||| || | ||| || || || || ||||| || ||||| | Sbjct 156262 GTGGAGCACAAAGGGGAGGAGAAAGCCTTCAACCCTGAGGAGATTTCCTCCATGGTCCTG 156321 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 || || |||||||| ||||||||||| || | || ||| || | | ||||| || Sbjct 156322 GTGAAGATGAAGGAGATTGCTGAAGCCTACCTGGGCCAAAAGGTGTCCAAAGCTGTCATC 156381 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || || || || || || ||||||| || || ||||| || ||| ||| Sbjct 156382 ACAGTCCCGGCGTACTTCAACGACTCCCAGCGACAGGCGACTAAAGACGCAGGCGTCATC 156441 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 || || | | || || || || || || || || || || || || || || || || Sbjct 156442 GCAGGACTGCACGTCCTGAGGATCATCAACGAGCCGACGGCGGCCGCCATCGCGTACGGT 156501 Query 349739 CTTGATAAAATGAGTGACCA-AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || | || | ||| |||| || | || || ||||| || || || || || Sbjct 156502 CTGGACAGAAGCAA-GACAGGAGAACGTAACGTCCTGATCTTTGACTTGGGCGGAGGAAC 156560 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 || || || || | || || ||||||| || || ||||| || ||||| || ||||| Sbjct 156561 CTTCGACGTGTCCATCCTGACCATTGAAGACGGTATCTTTGAGGTGAAAGCCACGGCTGG 156620 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCG 349893 || || || || ||||||||||| ||||| || || Sbjct 156621 AGACACTCACCTGGGTGGAGAAGACTTTGACAACCG 156656 >seq287 Length=613563 Score = 132 bits (146), Expect = 1e-25 Identities = 363/550 (66%), Gaps = 6/550 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| | || || |||||| | |||||||| || || ||||| || | | ||| Sbjct 483402 GAAAGGAATGTCCTCATCTTTGATCTTGGTGGTGGCACCTTCGATGTGTCCATCTTGACA 483343 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 | || || || || ||||| || || | |||||||| || |||||||||||||| ||| Sbjct 483342 ATCGAGGATGGCATCTTTGAGGTCAAGTCCACTGCTGGAGACACACATCTTGGTGGGGAA 483283 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAAT 349938 ||||| || || || | || || || | || || ||||| |||| || | Sbjct 483282 GATTTCGACAACCGCATGGTCAACCACTTCATCGCTGAGTTCAAGCG-CAAGTACAAGAA 483224 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || ||| | || || ||||| | ||||| || | || || |||||| | || || Sbjct 483223 GGACATTAGCGACAACAAGAGAGCTGTCCGTCGTCTGCGCACCGCTTGTGAAAGAGCAAA 483164 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 ||| || | || || | ||||| | ||||||||||| ||||| || ||| Sbjct 483163 GCGCACCCTGTCTTCCAGCACCCAGGCTAGCATTGAAATTGACTCTCTGTACGAGGGCGT 483104 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAG 350118 |||||||| | || || || | ||||| ||||| || | || || || | Sbjct 483103 AGATTTCTACACCTCAATCACCAGGGCTCGTTTTGAGGAGCTCAACGCTGACCTCTTCCG 483044 Query 350119 AGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGAT 350178 | || | || || ||||| || | | ||||| || ||| ||| ||||| Sbjct 483043 TGGCACCTTAGACCCCGTGGAGAAGTCACTCCGTGATGCCAAGATGGATAAAGGGCAGAT 482984 Query 350179 TGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATC 350238 | |||| | || || || ||||| || || ||||| || || | || || | || Sbjct 482983 TCATGACATTGTGTTGGTCGGTGGCTCAACCCGTATCCCCAAGATCCAGAAGCTGCTCCA 482924 Query 350239 TGAGTTTTTTAATGGCAAAGAACCT--TCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 || || || ||||| |||| | || | ||| | || ||||||||||||||||| || Sbjct 482923 GGATTTCTTCAATGG-AAAGGAGCTGAACAAGAGC-ATCAATCCAGATGAAGCTGTGGCT 482866 Query 350297 TATGGTGCTG 350306 ||||| |||| Sbjct 482865 TATGGAGCTG 482856 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| ||||| ||||| ||||| || ||||| ||||||| || || ||||||| Sbjct 483993 ATGCTGTAATTACGGTACCTGCCTACTTCAATGACTCCCAGCGCCAGGCCACTAAAGATG 483934 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||||| || | || | |||||||| | || || |||||||| || ||||| || | Sbjct 483933 CTGGCACAATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAACCAACAGCTGCTGCCA 483874 Query 349728 TTGCATATGGGCTTGATAAAA 349748 | || |||||||| || |||| Sbjct 483873 TCGCCTATGGGCTGGACAAAA 483853 >seq358 Length=564612 Score = 104 bits (114), Expect = 7e-17 Identities = 264/399 (66%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 349526 TTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCA 349585 || || || |||||||| || || ||||| | || ||||||||||| |||||||| || Sbjct 45359 TTCTTCCCGGAAGAAATCTCCTCCATGGTCCTGGTGAAAATGAAGGAGATTGCTGAGGCC 45418 Query 349586 TATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCC 349645 || | || | | || | | || || || || || ||||| ||||| || || | Sbjct 45419 TACCTGGGACAGAGGGTGTCAAACGCAGTCATCACAGTTCCAGCTTATTTCAACGACTCT 45478 Query 349646 CAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATT 349705 ||| | || || || || || || || | || | || || || || || || Sbjct 45479 CAGAGGCAAGCCACCAAGGACGCCGGGGTGATCTCTGGACTGAACGTCCTCAGGATCATC 45538 Query 349706 AATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAA-ATGAGTGACCAAGaaaa 349764 || || ||||| || ||||| || || || || || |||||| | | || ||| Sbjct 45539 AACGAGCCCACGGCAGCAGCCATCGCCTACGGCCTGGATAAAGGTAAAAGA-GGAGAGCG 45597 Query 349765 aaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGA 349824 || | || || |||||| | || || || || ||||| || || | || || | || Sbjct 45598 CAACGTGCTCATCTTTGATCTCGGCGGAGGCACATTTGACGTGTCCATCCTGACCATCGA 45657 Query 349825 AGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTT 349884 || || || ||||| || ||||| || || || || || || ||||| || || || || Sbjct 45658 CGACGGCATCTTTGAGGTGAAAGCCACCGCGGGAGACACGCACCTTGGCGGGGAGGACTT 45717 Query 349885 TGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAA 349923 ||| || || | || || ||||| | |||||||| Sbjct 45718 TGACAACCGGATGGTCAACCACTTTGTAGAGGAATTTAA 45756 >seq3065 Length=55652 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||||| || || || || || || ||||| |||||||| || || ||||| | Sbjct 25678 ATGCAGTTATCACAGTCCCTGCTTACTTCAATGACTCCCAGCGTCAAGCCACCAAAGACG 25619 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||||| ||| | ||||| || | || || ||||| |||||||||||||| | Sbjct 25618 CTGGAACCATTGCTGGGCTCAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCCA 25559 Query 349728 TTGCATATGGGCTTGATAAAA 349748 | || ||||| || || |||| Sbjct 25558 TCGCTTATGGCCTGGACAAAA 25538 >seq415 Length=537748 Score = 100 bits (110), Expect = 9e-16 Identities = 346/535 (65%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || ||||| | || || || || ||||| || || | | || ||||||| || Sbjct 49501 CTCATCTTTGACCTGGGCGGCGGCACGTTTGACGTCTCCATCTTGACTATTGAAGACGGC 49442 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || | || || || || || || | || |||||||| || || || Sbjct 49441 ATCTTCGAGGTCAAGTCCACAGCAGGCGACACCCACTTGGGAGGAGAAGACTTCGACAAC 49382 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGA 349950 || | || || || | || || ||||| |||| || | || || | || Sbjct 49381 CGCATGGTCAACCACTTCATCGGCGAGTTCAAGCG-CAAGTACAAGAAAGAAATCAGCGA 49323 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || || |||||||||| | || |||||||| | || ||||| |||| || Sbjct 49322 CAACAAGAGGGCGGTGCGTCGCCTGCGCACGGCGTGTGAGAGGGCCAAGCGCACCTTGTC 49263 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 ||| | ||||| | |||||||| |||||||| || || ||||||| | Sbjct 49262 ATCCAGCACCCAGGCMAGCATTGAAATCGATTCTCTGTACGAAGGAGTCGATTTCTACAC 49203 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || ||||| | || || || ||||| | ||| || || ||| ||| |||| Sbjct 49202 CTCAATTACCAGGGCCCGATTCGAAGAGCTGAACGCGGACCTGTTCCGAGGAACCCTGGA 49143 Query 350131 TCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGT 350190 ||||||||||| | | || || || ||| ||| |||||| | || | || Sbjct 49142 GCCTGTGGAAAAGGCTCTCCGTGACGCCAAGATGGACAAGGCTCAGATCCACGACATCGT 49083 Query 350191 TTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAA 350250 | ||||| ||||| || |||||||| || | || || | || || ||||| || Sbjct 49082 CCTGGTTGGAGGTTCCACTCGTATTCCCAAGATCCAGAAGCTGCTGCAGGACTTTTTCAA 49023 Query 350251 TGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 || || || | | | ||| | ||||| || |||||||| || || |||||||| Sbjct 49022 CGGGAAGGAGCTCAACAAGAGC-ATTAACCCTGATGAAGCAGTGGCCTATGGTGC 48969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515050764487667