Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3303 214 2e-50 seq4546 96.9 4e-15 seq1 96.9 4e-15 seq3798 84.2 2e-11 >seq3303 Length=47767 Score = 214 bits (236), Expect = 2e-50 Identities = 670/1025 (65%), Gaps = 33/1025 (3%) Strand=Plus/Plus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| |||| ||| || ||| |||||||||| | ||||| | |||| | |||| Sbjct 41310 AACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCG 41369 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTC 78627 ||||| |||| |||||||||||| ||||| || ||||| || || | ||| || ||| Sbjct 41370 TTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTC 41429 Query 78628 CGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGCC 78681 | | || || | ||||| |||| || | |||| | ||| | | | Sbjct 41430 CTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGC 41489 Query 78682 GCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG--GACGCCGGCGACCCCTTGAACG 78739 || |||||||||| || ||||| |||| | |||| || || || | ||| Sbjct 41490 TTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACG 41547 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799 ||||||| | || ||| ||| || ||||| | | |||||| |||||||| | Sbjct 41548 TCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGA 41607 Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGA--AAGGCC 78857 ||||||||||| | || ||| | |||| | ||||||| || || Sbjct 41608 TGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGC- 41666 Query 78858 GAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCAT 78917 | | |||||| |||| |||| || |||||||| || | ||||| | ||||||| | Sbjct 41667 -ATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTT 41725 Query 78918 GTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAG 78974 |||| |||| |||| |||| | || || |||| |||||||| ||||| Sbjct 41726 GTTGGACTTTT---CCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAA 41782 Query 78975 GTTACGCGTGACGA---CCCGAGTCACCTCGTACAATTTGGCGAAATCAAAA-TGATTTC 79030 || | |||||| | ||||| || ||| || |||||| | || Sbjct 41783 ATT---CTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCGCTC 41839 Query 79031 CTT--TGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCG 79087 | ||| | | | || ||| | || ||||| || ||||| || ||| || Sbjct 41840 CGGGGTGACGTACATGTTGAGCGCA-ATTGAGGCCAGATTACACACCGCTACCTCATCGT 41898 Query 79088 GGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCT 79147 |||| | ||| || ||||||||||| | || |||||||||||||| | |||| Sbjct 41899 GGCTGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCT 41958 Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207 |||||||||||| ||| |||||||| ||||| |||||| ||||| || || || Sbjct 41959 GTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTG 42018 Query 79208 CCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGAC 79267 ||| || || |||| ||| ||| | | | | ||| || || |||| || | Sbjct 42019 TCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCC 42078 Query 79268 CCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGC 79327 |||| | || | ||| | || | ||| ||||||| || ||| ||| | Sbjct 42079 CCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAGCC 42138 Query 79328 CCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGA 79387 | |||||||||| || |||||||| ||||||||||| |||| || ||| ||||| Sbjct 42139 CTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGA 42198 Query 79388 AGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 | ||||| || ||||||| |||||| ||| ||||| | | | | |||||| | || Sbjct 42199 ACAGGTCGGGRATCCACA-GGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCG 42257 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||| ||||| || ||||| | | |||||||||||| |||||||| || ||| Sbjct 42258 GTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATG 42317 Query 79507 GCGAA 79511 ||||| Sbjct 42318 GCGAA 42322 Score = 159 bits (176), Expect = 4e-34 Identities = 645/1001 (64%), Gaps = 37/1001 (4%) Strand=Plus/Minus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 |||||||| ||||| ||||| |||||||| ||||| | || ||||| || || | Sbjct 42322 TTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAG 42263 Query 19553 AACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGA 19611 ||| || | |||||| | | | ||||| ||| ||||||| |||||| || || Sbjct 42262 AACACCGGAAAGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGGCCT-GTGGATYCCCGA 42204 Query 19612 CCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATG 19671 ||| |||||| ||| || |||| |||| || ||| |||||||| || |||| || Sbjct 42203 CCTGTTCATGAAGAGAGTGGAGAGCAACGAGGACTGGTCTCTGATGTGTCCCAACGAGTG 42144 Query 19672 CCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC 19731 ||| || || ||| || || |||| |||| | || | ||| | || | Sbjct 42143 CCCAGGGCTGGACGAGTGCTGGGGGGAGGAGTTCGAAAAGCTCTACACCTCCTATGAGAA 42084 Query 19732 CCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAG 19791 ||||| ||||||| ||||| ||| | | | | ||| || ||| || | Sbjct 42083 GCAGGGGAAGTTCAAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTC 42024 Query 19792 CCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAA 19851 |||| || || ||||| || |||||| ||||| |||||| ||| ||| || Sbjct 42023 CCAGACAGAAACTGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAA 41964 Query 19852 TCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTC 19911 || |||| | ||| | |||||||| |||||| || || ||||| || ||| | Sbjct 41963 CCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGAAATTATYGAGTACAC 41904 Query 19912 CAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCA 19970 || | || ||| || |||||||||||||| || | ||| || | | ||||| Sbjct 41903 CAGCCACGATGAGGTAGCGGTGTGTAATCTGGCCTCAAT-TGCGCTCAACATGTACGTCA 41845 Query 19971 ---AGGCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGG---TCGTCACGC 20024 || | || |||||| ||| || |||||| | |||||| | Sbjct 41844 CCCCGGAGCGGACTTTTGACTTTAAAAAACTGGCATCTGTGACCAAAGTAATCGTCAAG- 41786 Query 20025 GTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGCGGCGCGCAAGT 20081 ||| |||| |||||||| |||| || || | |||| |||| |||| Sbjct 41785 --AATTTGAACAAGGTCATCGAAATTAACTACTATCCAGTGCCCGAAGCGG---AAAAGT 41731 Query 20082 CGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGA 20141 | || | ||||||| ||||||| | || |||||||| || |||| || | ||||| Sbjct 41730 CCAACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCC 41671 Query 20142 TGCTCGGCCTCTCATTCGACGATCCCA-AGGCGCGCGAGCTCAACAAGGGCATCTTCGAG 20200 | | | | | ||||| | | | |||| | ||| || | ||||||||| Sbjct 41670 TCATGCGTTACCCGTTCGA-AAGCAAAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAG 41612 Query 20201 GCCGTGTACCACGCGGCCCTCCTGGAATCG---TGCGAACTCGCCAAAGAGGACGGCCCG 20257 ||| | |||||||| || |||||| || ||||| || ||| ||| |||||| Sbjct 41611 GCCATCTACCACGCCGC---CCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCC 41555 Query 20258 TACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGG-- 20315 |||||||||| | || || |||| | |||| ||||| ||| |||||||||| Sbjct 41554 TACGAGACGTACGCAGGCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTGGGAG 41495 Query 20316 -----GCGTCACTGAGAATG-AGTTTTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACG 20369 || ||| || | || | |||| || |||| ||||| | ||||| Sbjct 41494 AAGAAGC-CCACCGA-ACTGCTGGACTGGAAGCTGCTGAAGGAGAAGATCGCCATCCACG 41437 Query 20370 GGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGG 20429 | | | ||| |||| | || || ||||| || ||||| |||||||||||| ||| Sbjct 41436 GCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGG 41377 Query 20430 GGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 | ||||||||| | |||| | ||||| | |||||||||| Sbjct 41376 GCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTAC 41336 >seq4546 Length=26461 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||||||| ||||| || ||||||||||| ||||| ||| ||| || || |||||| Sbjct 23553 GCTTTTGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGGCTC 23494 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| ||||| | | |||||||||||||||| ||||| ||| Sbjct 23493 AAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGTCGGGATGAG 23434 Query 60111 G 60111 | Sbjct 23433 G 23433 >seq1 Length=4870262 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| ||| || ||||||||||| | |||| ||||||||| Sbjct 4202901 CTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCT 4202960 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||| ||||| ||||| || Sbjct 4202961 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTC 4203008 >seq3798 Length=52883 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 8311 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 8252 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 8251 AACTTCTTTGAGAAGCGCGTGGGCGAGTA 8223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548452881542160