Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3303 105 7e-18 seq860 86.0 7e-12 seq585 86.0 7e-12 seq4546 84.2 2e-11 >seq3303 Length=47767 Score = 105 bits (116), Expect = 7e-18 Identities = 263/395 (67%), Gaps = 4/395 (1%) Strand=Plus/Minus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 |||||||| ||||| ||||| |||||||||||| | | || || || ||||| | Sbjct 42322 TTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAG 42263 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 || || | || ||| | | | | ||||| || ||| || |||||||| || || Sbjct 42262 AACACCGGAAAGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGGC-CTGTGGATYCCCGA 42204 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||| |||||| | | ||||||| ||||||| |||| |||||||| || |||||||| Sbjct 42203 CCTGTTCATGAAGAGAGTGGAGAGCAACGAGGACTGGTCTCTGATGTGTCCCAACGAGTG 42144 Query 53749 CCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 ||| || || | | ||| || || |||||||| | || | || | || | Sbjct 42143 CCCAGGGCTGGACGAGTG-CTGGGGGGAGGAGTTCGAAAAGCTCTACACCTCCTATGAGA 42085 Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867 ||||| | |||| ||| ||||| | || | ||| | || | || || Sbjct 42084 AGCAGGGGAAGTTCAAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGT 42025 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 |||| || || || ||||| |||||| ||||| || | |||| |||||||| Sbjct 42024 CCCAGACAGAAACTGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCA 41965 Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 |||| |||| | ||| |||||| || |||||| Sbjct 41964 ACCAACAGAATCTGGGCACCATCAAGTCCAGCAAC 41930 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 41423 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 41364 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 |||| | ||||| | |||||||||| ||| || ||| | || |||||| || Sbjct 41363 CATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGAT 41304 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || |||| |||||| Sbjct 41303 CGTCAACCCTCATCTGCTCAAAGACCTG 41276 >seq860 Length=275637 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| ||||| || ||||| ||| | || ||||| || || Sbjct 13464 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCAAACTGA 13405 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || |||| ||||||| |||||||||||| || |||||||| || Sbjct 13404 CCCAGTGGCTGCAGGATGTTCGCGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACG 13345 Query 117425 ATCGT 117429 || || Sbjct 13344 ATGGT 13340 >seq585 Length=402336 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 |||||||||||||| | |||||| | |||||||| || || || ||||||||||| Sbjct 99273 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCGCCGTGCAACCTGGTTCCAAACTGA 99214 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| | ||||| | ||||||| |||||||| ||||| |||||| || Sbjct 99213 CCCAGA-GGCTGCAACAGGTTCAAGTTGTTGCTTCCCACGAAGTTCTGGGCCAAACCAAC 99155 Query 152148 AATCGT 152153 ||| || Sbjct 99154 AATGGT 99149 >seq4546 Length=26461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| | || |||| || || || | | |||||||||||| ||||| | |||||| Sbjct 23435 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 23494 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||||||||||||| ||| || || |||||||||||| || || |||||| || Sbjct 23495 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAGCC 23554 Query 74892 ACAA 74895 |||| Sbjct 23555 ACAA 23558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547144253142200