Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3303 143 3e-29 seq1 98.7 1e-15 >seq3303 Length=47767 Score = 143 bits (158), Expect = 3e-29 Identities = 551/843 (65%), Gaps = 39/843 (5%) Strand=Plus/Plus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||||| |||||||| | |||| ||||| || ||| |||||||||| Sbjct 41497 CCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTA 41554 Query 80598 CGGGCC---CTCCGTCTTGGCCAGCTCACA---CGACTCCATAAGGGCCGCGTGATAAAT 80651 ||||| ||| | ||||||||| || || |||| ||||| ||||| || || Sbjct 41555 GGGGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCCTCC---AGGGCGGCGTGGTAGAT 41608 Query 80652 GCACTCAAAGACGCCCTTGTTCA-CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710 | ||| |||| | |||| || | | |||| | | ||||||| | | || Sbjct 41609 GGCCTCGAAGATTTGAATATTCAGCAGC-TGAGCCTCTTTGCTTTCGAACGGGTAACGCA 41667 Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770 | | ||||| | || |||| || || ||||| || | ||||| | ||||||||||| Sbjct 41668 TGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGT 41727 Query 80771 TCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGC 80830 | || || || || || | ||| || ||||| | |||||||| ||||| || | Sbjct 41728 TGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAAATT-C 41786 Query 80831 GTG-TAACAACCCGTGTAACATCATG-AAGTTTCTGAAAGTCGAA--TTGGTTCC-CCTT 80885 || | || || ||| ||| ||||| | |||||| || | | ||| | Sbjct 41787 TTGACGATTACTTTGGTCACA-GATGCCAGTTTTTTAAAGTCAAAAGTCCGCTCCGGGGT 41845 Query 80886 CAC--AAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCT 80943 || | ||| | || | || |||||||| ||||| || ||||| || | || Sbjct 41846 GACGTACATGTTG--AGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC-GTGGCT 41902 Query 80944 -GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 || |||| | ||||| ||||| | || ||||| || || ||||| || | || Sbjct 41903 GGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTG 41962 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| |||||| ||||| ||||| |||||| || || || || || ||| Sbjct 41963 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTG 42022 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCC 81119 |||| || | ||||| ||| | || | ||||| ||||| ||| ||| || || Sbjct 42023 GGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTT---GAACTTCCC 42079 Query 81120 TTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178 | | |||| || ||| ||||| ||||||| | || || || Sbjct 42080 CTGCTTCTCATAGGAGGTGTAGAGCTT-TTCGAACTCCTCCCCCCAGCACTCGTCCAGCC 42138 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 ||||||||||||| || |||||||| |||||| || | |||| || |||||||| Sbjct 42139 CTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGA 42198 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| || ||||| ||| || ||| ||||| | | | | |||||| | || Sbjct 42199 ACAGGTCGGGRATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGG 42258 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 ||| | ||| || ||||| | | ||| || ||||| |||||||| |||| || Sbjct 42259 TGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGG 42318 Query 81359 CGA 81361 ||| Sbjct 42319 CGA 42321 >seq1 Length=4870262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| |||||||||| ||| || || || || ||||| || | |||||| Sbjct 4202900 ACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGC 4202959 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| |||||| || || ||||| ||| ||| || | Sbjct 4202960 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATT 4203019 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||||| ||||| Sbjct 4203020 CGATGATGGCGTACCACACCTGCTGGGCCTTCACCAC 4203056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570235625177680