Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3303 214 2e-50 seq1 98.7 1e-15 seq4546 89.7 7e-13 >seq3303 Length=47767 Score = 214 bits (236), Expect = 2e-50 Identities = 714/1100 (65%), Gaps = 17/1100 (2%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| ||||| || | || | || |||||||| || Sbjct 41241 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 41300 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 41301 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 41360 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 41361 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 41420 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 41421 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 41480 Query 77301 TCTGAAGG-TACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCC 77359 || | || | | | ||||| | ||||| || || || || || || | || || Sbjct 41481 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCC 41539 Query 77360 ATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 || || || || || || || | | || || || || ||||| |||| || Sbjct 41540 TGCGTACGTCTCGTAGGGGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCCTCCAGGGC 41596 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476 ||| || || | ||||| || | |||| || || || || | || || || Sbjct 41597 GGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAA 41656 Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 ||| ||| | | || || |||||||| || || || || || ||||| ||||| || || Sbjct 41657 CGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCT 41716 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 || | ||| ||||| ||| ||||| || | ||||| || ||||| || || | || Sbjct 41717 GTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTT 41776 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || | ||| | || | |||||| ||| ||||| ||| ||||| | | Sbjct 41777 GTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCG 41836 Query 77657 ATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 || | || ||||||| | || || || || |||||||| || |||||||||| Sbjct 41837 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC 41896 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 | ||| || | || || || || || || || || | ||||| ||||||||||| Sbjct 41897 GTGGCTGGTGTACTCRATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATT 41956 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 |||||||||||||| | ||||| | ||| || || || || | || || || ||||| Sbjct 41957 CTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTC 42016 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATCATAGATTTGTAT 77891 |||| || ||||||| | | || || ||| || ||| || | || ||| | Sbjct 42017 TGTCTGGGACTCGATAACGGCGTGCC--ACAACTGCTGAGCCTTCACCACGCGCTTGAAC 42074 Query 77892 CGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCC 77951 || || | ||||| || || ||| ||| || || || ||||| || ||| Sbjct 42075 TTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCC 42134 Query 77952 AATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTC 78011 | || ||||| || || || ||||||| |||||||| | | || |||| ||| Sbjct 42135 AGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTC 42194 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATT 78070 || || || || || ||||| || || || || || || | || ||| || || || || Sbjct 42195 ATGAACAGGTCGGGRATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTT 42253 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 ||| || ||||| || || || || || || | | || | ||||| || || || || Sbjct 42254 TCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTA 42313 Query 78131 TATTGCCATAACTCCAGGTC 78150 || || | |||| |||| Sbjct 42314 CATGGCGAAGGCTCCTGGTC 42333 >seq1 Length=4870262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| | Sbjct 4202908 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 4202967 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| || || || | || || |||||||| |||| |||||||| || Sbjct 4202968 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATGAT 4203026 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || | ||| || || || |||||||||||||| ||||| || | |||||| | Sbjct 4205991 CACCACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCA 4206050 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | | |||||| ||||| |||| || || |||||||| | ||||| || | | | | Sbjct 4206051 GGAGAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGT 4206110 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 | | ||| | || ||||||||| | || || || || || || ||||| Sbjct 4206111 CCAGCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 4206159 >seq4546 Length=26461 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| | |||||| | ||||| || | || || || ||||||||||| | || ||| Sbjct 23435 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 23494 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| || || ||||| || || || ||||| ||||| || || |||||||| || Sbjct 23495 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCCGCAAAAGC 23553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694577720236960