Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20aleutianus_20[genbank_20GCA_5F001910805.1_202016-12-20] 10,489 sequences; 899,650,391 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq454 161 1e-34 seq412 147 3e-30 seq2938 91.5 2e-13 >seq454 Length=519262 Score = 161 bits (178), Expect = 1e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| ||||| | ||||| || ||| | | ||| | |||||||| |||| ||| Sbjct 193840 CCCTGCACGTTATTGCAGACGAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCGAAGCCC 193781 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| ||||| |||||||||||| |||| ||||||||| ||| |||| Sbjct 193780 ACGCTGCCTCCGAACGTGCTCGGCTTCCAGTACTCCGGCGAGCAGATGGGGTTTCCCATT 193721 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | ||| ||||||||| | || ||||||| ||| | ||| |||| || |||||||||||| Sbjct 193720 AAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTCTCCCCAAAGATGGCGTTG 193661 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | |||||||| ||||||| | || | ||| || ||||| || ||||||| Sbjct 193660 GTCCGGGGCTTCTCCACCAGCAGACCCGGGTAGAGTTCCACGGCGTCGACGT 193609 Score = 118 bits (130), Expect = 2e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || |||||| ||| || || || | | |||| Sbjct 191816 ATGAGCCGTGTGGTCTGGAAGAGCCTCTCGTCGTCCCAGTCCGGGTGGACCTCCTTCAAC 191757 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || ||||||| ||||||||| | |||||||| |||||||||||||| || || || Sbjct 191756 ACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCGGGG 191697 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || ||||| || || ||||| | || ||||| |||| ||||| Sbjct 191696 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACTTGAGGAGGG 191637 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 ||| ||||| || || || || || | |||||||||| Sbjct 191636 TAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACA 191594 Score = 102 bits (112), Expect = 1e-16 Identities = 203/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || || || || || ||||| || || || | | |||||||| | Sbjct 192679 CTTACCCGTCCAGCGATCTGATTGGTAAACGACTCCACAAGGTTGCCGATGCCGTGCTCC 192620 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | | ||| |||||| |||| || ||| | |||| |||| | | | ||||| | Sbjct 192619 GTCACCACGGAGTTGTTGAAGACAAACTGTTTA--TAGTTGTACTCTTTCTCCTCAATGT 192562 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 || | ||| ||||| |||| |||||||| |||| |||| |||||||| | || | Sbjct 192561 GGAAAGTATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGC 192502 Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 | || ||||||||||| || | || ||||| ||||| | |||| |||| || Sbjct 192501 GGTTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAG 192443 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 | |||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 192442 TTATAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 192387 >seq412 Length=547801 Score = 147 bits (162), Expect = 3e-30 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| || || || || | ||| || | |||||||| | Sbjct 407104 GGACACCACTTGGTGTTGAGGCACACYAGTTTCTTCAAAGTGGCAGTTTTGACGATATTG 407045 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| ||||| || ||||||||||||||||||||| | |||||||||||| ||| Sbjct 407044 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 406985 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| |||||||| |||||||| ||||| |||| ||| | || |||||||| ||||| Sbjct 406984 GCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATA 406925 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | | || || | ||||| | || | |||| ||| | ||||| ||| || | ||| Sbjct 406924 CCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCA 406865 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 406864 CCGTAGAG 406857 Score = 136 bits (150), Expect = 6e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| || || || || | ||| | | |||||||| | Sbjct 393118 GGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAAAGTGGAAGTTTTGACGATATTG 393059 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| ||||| || ||||||||||||||||||||| | |||||||||||| ||| Sbjct 393058 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 392999 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||||| || |||||||| ||||| |||| ||| | || |||||||| || | Sbjct 392998 CCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAACAGT 392939 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 ||||||||| | || |||| || || |||| ||| | ||||| ||| || | ||| Sbjct 392938 CTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCCAAAGCATCTATGTCA 392879 Query 8543 CCGTAAAG 8550 || || || Sbjct 392878 CCATAGAG 392871 Score = 113 bits (124), Expect = 6e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| | ||||||||| || ||||| || ||| |||||| Sbjct 388690 TCACCAATGATGATGAGTCTGGCGGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 388631 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || || | ||||| || ||||| | ||| || ||||||||||| Sbjct 388630 TCTGCCTTCAGGATGTCACAGGCTCTGTTATGCTCCCTCAACCATATGGTGGCGTACATG 388571 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| || || | |||||||| |||| ||||||| ||||||||| | | | || Sbjct 388570 GTGAGGCCCGGCAGGAGGCCAAATACCTCCTGACCGATGGCCAGACGCTTCTCTGGAGGG 388511 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 | | |||||| | ||||||||| |||| || || | || || ||||| ||| Sbjct 388510 AAGTTTTCAGGATAAACCATGTGCACAGGGACTTCAGCTACTGTAGGAGGGTACATCTCA 388451 Query 9472 CC 9473 || Sbjct 388450 CC 388449 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| ||||||||||| || ||||| || ||| |||||| Sbjct 405188 TCACCAATGATGATGAGTCTGGTGGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 405129 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || || || ||||| || ||||| | ||| || |||| ||||| Sbjct 405128 TCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAACCATATGGTGGAATACATG 405069 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9399 |||| || || | |||||||| ||| ||||||| ||||||||| Sbjct 405068 GTGAGGCCCGGCAGGAGGCCAAATAACTCATGACCGATGGCCAGACGC 405021 >seq2938 Length=62945 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 8375 CCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8434 || ||||||||||||||||||||||| | || || || || ||| ||| ||||||| Sbjct 60536 CCTCCGAAGGTGCTGGGCTTCCAGTAATCTGGAGAACATATAGGGTTTCCCAGGAGGCCT 60477 Query 8435 TTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGC 8484 || |||||||| || || |||| ||| | |||||||| || || ||||| Sbjct 60476 TTAAGGGAGAAGGGGGCGCCCATCTCTATCATGCTCTCTCCAAATATGGC 60427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716782808490560