Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq51664 448 6e-121 seq108610 93.3 5e-14 >seq51664 Length=13532 Score = 448 bits (496), Expect = 6e-121 Identities = 1274/1944 (66%), Gaps = 23/1944 (1%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 10779 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 10838 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 10839 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 10898 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 10899 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 10958 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG-AGGTTCCCAATTCCAA-A 53324 | || || || | |||| | ||| || || || || || |||| | |||| | Sbjct 10959 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGCA 11016 Query 53325 GATCCGACGG-TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGAT 53383 | || | || | | | | | || || || || ||| || || Sbjct 11017 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACT-GCAGGATGCCCTTGCTGACGGGAGAG 11075 Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | || || ||||| || || || | || || || || |||||||| | || Sbjct 11076 CCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCG 11135 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 ||| || ||| |||||||| | |||| || || || || ||| || || Sbjct 11136 GCGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTCGCTTTCGAAC 11195 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 || ||| | ||| || || || || || || ||||| || ||||| || || || || Sbjct 11196 GGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTG 11255 Query 53564 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 || | ||| || || |||| ||||| || | ||||| || ||||| || || || || Sbjct 11256 TGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTG 11315 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA 53683 || | || |||| ||||||||| |||| |||||| ||| ||||| |||| Sbjct 11316 TTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAA-GTCCG 11374 Query 53684 -TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT- 53738 || | || ||||||| | ||||| || ||||||||||| || |||||||||| Sbjct 11375 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC 11434 Query 53739 -TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 53797 | || | || | || || || ||||| || || || |||||||||| || | | Sbjct 11435 GTGGCTGGTG--TACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGA 11492 Query 53798 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTT 53857 || ||||| || ||||| |||| || || || || || || ||| ||||||| |||||| Sbjct 11493 TTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTT 11552 Query 53858 TCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTAT 53917 || ||||||| || |||| || | ||| | ||||||| | | ||| | Sbjct 11553 TCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAAC 11612 Query 53918 CTCTTTTCTCTTTCGTATAGT--GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGT 53975 || || ||| |||| || || | ||| ||||| || ||||| | || Sbjct 11613 TTCCC--CTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGT 11670 Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 54035 |||| || || || || | |||||||||| ||||| || ||| || ||||| | Sbjct 11671 CCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCT 11730 Query 54036 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCG 54094 |||| || || || || ||||| || | || ||| || || |||| ||| || ||||| Sbjct 11731 TCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCC 11789 Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 ||||| || ||||| || || || ||||| | | | || | ||||| || |||| | Sbjct 11790 TTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGG 11849 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | |||| || | ||||| || ||||| || | ||| | || ||||| Sbjct 11850 TACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTG 11909 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 54274 || |||||||||| ||| || | || || ||||| || ||||| |||| ||| ||| Sbjct 11910 TTGTAAACTCTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAG 11969 Query 54275 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATT 54334 || || | | | || || || | | ||| || ||||| || ||| |||| Sbjct 11970 CTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGACC 12029 Query 54335 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 54394 | |||||| | || | ||| || || ||||| || || || || || ||||| || Sbjct 12030 AGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 12089 Query 54395 AGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 54454 || || ||||| |||| || | | | ||||| || || || | || || || ||| Sbjct 12090 AGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCG 12149 Query 54455 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 || || ||||| || || || || || ||||||||||| || |||| ||| || ||| Sbjct 12150 TGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATC 12209 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 | || || || || || || | ||| | ||||||||| |||| || | | ||| | Sbjct 12210 TTGTGGATCCCGACGGCCACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCG 12269 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || || |||| || |||||| |||| ||| || || || || ||||||| || || Sbjct 12270 TTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA 12329 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATG 54694 |||| ||| |||| || | |||||||| || || | | | ||| | || | Sbjct 12330 TCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGC 12389 Query 54695 GTAATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 || | ||| || || || || || || ||||| || |||| ||||| | | Sbjct 12390 GT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTACAG 12448 Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 |||| |||||| ||||| || | || || || |||||||| || ||||| ||||| || Sbjct 12449 GTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGAT 12508 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 54873 | || || || ||||| || || || || | || || |||||| | || || || Sbjct 12509 CCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCAGC 12568 Query 54874 TGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 | ||| ||||| | || || || || || || | || | || ||||| |||||||| Sbjct 12569 AGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTCAT 12628 Query 54934 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 54993 | || | ||||| | |||| ||| | || || || | || || || Sbjct 12629 GGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATGCG 12688 Query 54994 AGATGTGATTTTATCAAACATGAC 55017 | | |||||||| || |||||||| Sbjct 12689 ACAAGTGATTTTGTCGAACATGAC 12712 >seq108610 Length=4066 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || || |||||||||||||| || || || || | || || || | Sbjct 457 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 516 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||| || || |||| || ||| |||||||| | || |||| ||||||||||| Sbjct 517 GAGCATAGTCAGGGTGTTTGGTGGTAAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 576 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || || ||| | || | || ||||| |||||||| Sbjct 577 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592486302839040