Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq115624 116 4e-21 seq158314 114 1e-20 seq105069 109 6e-19 seq142310 102 8e-17 seq47767 84.2 2e-11 seq60932 82.4 8e-11 seq5354 82.4 8e-11 >seq115624 Length=278 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 14/232 (6%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT- 40757 ||||| || || || || || || ||||||||| | || || || ||| || | | Sbjct 278 TTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGTGATTCCATT 219 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA------------ 40805 | ||||| |||||| ||||| | ||||||||||||||||| | || Sbjct 218 GAAAACG-TCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCTCCAGATNNNNNNNNNNN 160 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| || || || |||||||| |||| ||||||||| |||||| Sbjct 159 NCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTA 100 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| || |||| || || || || ||||| ||||||| ||| Sbjct 99 CAACATCCAGAAAGAATCCACCCTCCACCTGGTCTTGCGTCTGAGGGGAGGC 48 >seq158314 Length=2971 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||||||||| ||||| ||||| ||||||| || || |||||| Sbjct 1810 GGAGAGCGTGTGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCC 1869 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||||| ||||| | ||||| |||||||| ||||| ||| ||||||||| Sbjct 1870 TCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGTCTGACCTTCTCCAACGAGCTA 1929 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 1930 ATCAGCAGAGACGAGG 1945 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 116724 TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACG 116783 |||| ||| ||||| | |||||| |||||| |||| || || ||||||||||||| Sbjct 8 TGAAGGACGACGAGAGGTTCTTCATCTCTCACGTGTTGGCGTTCTTTGCCGCCAGCGACG 67 Query 116784 GCATCGTCAACGAGAATCTGGTCGAGC 116810 |||||||||||||||| ||||| |||| Sbjct 68 GCATCGTCAACGAGAACCTGGT-GAGC 93 >seq105069 Length=573 Score = 109 bits (120), Expect = 6e-19 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| |||||||| || || ||||| || |||||||| || |||| ||| Sbjct 135 GAGCCGCTGCTGAAGGAGAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 76 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||| | |||||||| Sbjct 75 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCAGAGGAGGT 23 >seq142310 Length=1461 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | ||||| |||||||| || |||||| ||||||| || ||| ||||| Sbjct 953 GGGGAGCGAATTGTGGCTTTCGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCT 894 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| |||||||||||||| | || || ||||| ||||| || | | ||||||||| Sbjct 893 GCCATCTTTTGGCTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTG 834 Query 117152 ATCTCCAGGGACGAGG 117167 || | |||| |||| Sbjct 833 ATTAGCCGGGATGAGG 818 >seq47767 Length=302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/171 (70%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 40729 ACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAA 40788 ||| | || || || ||| |||||| | ||| |||||| || || | |||||| Sbjct 1 ACCCTGGAGGTGGAGCCCAGTGACAGCATTGAAAATGTCAAGGCCAAGATCCAAGACAAA 60 Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 ||||||||||| | |||||||| || || |||| || || || |||||||| || Sbjct 61 GAGGGCATCCCTCCAGACCAGCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGA---- 116 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||||||||||| |||| || ||||| ||| Sbjct 117 --NNNNNNNNNAGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTG 165 >seq60932 Length=4876 Score = 82.4 bits (90), Expect = 8e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTG 40908 ||||||||| |||||||||||||||||||||| |||| || ||||| ||| |||| || Sbjct 4674 CGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTG 4615 Query 40909 AGGGGCGG 40916 |||||||| Sbjct 4614 AGGGGCGG 4607 >seq5354 Length=6289 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 116583 TGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGC 116642 |||| || || ||| || | || || || | |||||||| || ||||||||||| ||| Sbjct 1360 TGCTCCGAGAAAACGCCAGACGATTTGTCGTCTTCCCCATCCAGTACCCGGACATCTGGA 1301 Query 116643 GCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 | |||||||| |||| |||| || | |||||| || |||||||||| Sbjct 1300 GGATGTACAAGCAGGCACAGGCTTCTTACTGGACGGTGGAGGAGGTGG 1253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514147234932480