Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq51664 143 2e-29 seq48423 87.8 2e-12 seq120612 84.2 2e-11 >seq51664 Length=13532 Score = 143 bits (158), Expect = 2e-29 Identities = 493/757 (65%), Gaps = 24/757 (3%) Strand=Plus/Plus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | |||||||| |||| ||| || | | | || | Sbjct 10819 CTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGA 10878 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | | ||||| || ||||||||||| || ||||| || || | |||| Sbjct 10879 TGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 10938 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| |||| || || ||| || ||||||| || || || || || Sbjct 10939 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCA 10998 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 ||||||||| ||| | | ||| || |||| || || | ||| Sbjct 10999 GCAGCTTCCAGTCCAGCAGTTCGGTGG----------GC--TTCT--TC-TCCCACATGT 11043 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || ||| |||| || ||| | | | ||||| || ||||| ||| Sbjct 11044 CGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCT 11103 Query 133507 TTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAA 133565 ||||||||||||||| ||||||| ||||| ||| ||| || |||| ||| Sbjct 11104 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGACCTCGAAGATTTGAA 11163 Query 133566 TAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGT 133623 || || | | | ||| || || ||||| ||| | | | | || | || | || || | Sbjct 11164 TA-TTCA-GCAGCTGAGCCTCTTCGCTTTCGAACGGG-TAACGCATGAGGATGAAGGCAT 11220 Query 133624 CGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT 133683 | |||||||| || | ||| | || || || | || || ||| | | |||| | Sbjct 11221 CCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTT 11280 Query 133684 CGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAG 133743 ||| | ||||||| ||| | |||||||||||||| | ||| |||||| | ||| | Sbjct 11281 CGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGG 11340 Query 133744 TCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGA 133803 ||| | | ||| | ||||||| ||| || || || |||| || |||||| Sbjct 11341 TCACAGATGCCAGTTTTTTAAAGTCAAAAGTCC--GCTCCGGGGT-GACGTACATGTTGA 11397 Query 133804 CGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCT 133863 ||||| ||| |||||||| || || ||| | | | | |||| || ||| | Sbjct 11398 GCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTT 11457 Query 133864 CGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGC 133923 | | ||| ||||||||| | ||||||||||||| ||| | ||| ||||| | |||| Sbjct 11458 CTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGC 11517 Query 133924 AATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 | || ||||| |||||||| ||| ||| ||||| Sbjct 11518 AGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTC 11554 >seq48423 Length=831 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 118606 AGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCT 118665 |||| ||||||||||| || ||||| ||||| ||||| || || ||| |||||| | Sbjct 5 AGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTTGCTTTAACAT 64 Query 118666 GTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTA 118725 ||| | |||||| || ||| ||||| | ||| | || || |||||||| || || | Sbjct 65 TTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTCTTCA 124 Query 118726 CAAAAATCTGCAT 118738 | || |||||||| Sbjct 125 CGAAGATCTGCAT 137 >seq120612 Length=9325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 133851 TACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTG 133910 |||| |||||||| | ||| || |||||| ||||||||||||||| ||| | || ||| Sbjct 2703 TACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 2644 Query 133911 CTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCG 133961 || | ||||| |||||||| |||||||| ||| |||||||||| Sbjct 2643 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 2593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432950338158016