Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq125644 109 4e-19 seq152964 107 1e-18 seq109119 104 2e-17 >seq125644 Length=562 Score = 109 bits (120), Expect = 4e-19 Identities = 138/187 (74%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 107904 GTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC 107963 ||||| ||| |||| ||||| | ||||| || ||| ||||||| ||| ||||| ||| Sbjct 3 GTGGTATATACCTCGTGGTCACGGGTGCAGGCAGACTTGAACTGCATGAAAGAC---CTC 59 Query 107964 CAGAGCTCAGTG--CCA-TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 | || |||| ||| |||| |||| | || || || |||||||||||||||||||| Sbjct 60 CTGAACTCACACATCCAGTGGAGGTACCTGCTAAACACCTGCGGGACAGACTTCCCCATC 119 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 || || |||| |||||||| | || || ||| | || || | ||||| |||||| Sbjct 120 AAAACTAATGGAGAGATGGTTCATGCTCTGAAGGCCCTAAACGGGAGAAACAGCATGGAG 179 Query 108081 TCTGAGG 108087 |||||| Sbjct 180 ACTGAGG 186 >seq152964 Length=1040 Score = 107 bits (118), Expect = 1e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| |||| ||| || || |||||||||||||| |||||| ||||||||||| Sbjct 914 CCTCTAAGTGAAGAGGAGAAGGATTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAG 973 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | || ||||| || || ||||| || || | || |||||||| |||||||| Sbjct 974 ATTGAGATGTTCGAACGACTTCTACGAGCTGTTTACACTCCGCAGAACATCTACTGTGTA 1033 Query 107808 CACGTGG 107814 || |||| Sbjct 1034 CATGTGG 1040 >seq109119 Length=323 Score = 104 bits (114), Expect = 2e-17 Identities = 113/149 (76%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 107691 CTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATT 107750 || ||| |||| ||| || || |||||||||||||| |||||| ||||||| |||||| Sbjct 1 CTCAGTGAAGAGGAGAAGGATTTTCCCATTGCCTACTCCATGGTGATCCATGACAAGATT 60 Query 107751 GAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCAC 107810 || | || || || || || ||||| || || | | |||||||| |||||||| || Sbjct 61 GAGATGTTCGAGCGACTTCTACGAGCTGTTTACACTCTGCAGAACATCTACTGTGTACAT 120 Query 107811 GTGGATGTGAAGTCCCCAGA-GACTTTCA 107838 ||||| ||| |||||| | || ||||| Sbjct 121 GTGGACCAGAAATCCCCAAAGGAATTTCA 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347562307136352