Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq51664 159 7e-34 >seq51664 Length=13532 Score = 159 bits (176), Expect = 7e-34 Identities = 407/612 (67%), Gaps = 13/612 (2%) Strand=Plus/Minus Query 248802 CGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCT 248861 || || |||||| ||| | ||||| | ||||| || |||||| || || || | Sbjct 12338 CGACAGAGATTTCTCCTACAACTTCTTCGGCTTCAAGACTCTGGAGCGGTCCTACCTGTT 12279 Query 248862 CAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGG 248921 || || | ||||| | | || ||| ||||||||| | ||| ||||||| ||||| Sbjct 12278 GAAGATCAACGGCAAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGAGTGGCCGTCGG 12219 Query 248922 GATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATG--AGTGAACGC 248979 ||| |||||| ||||| || | | |||||||||| | || || ||| Sbjct 12218 GATCCACAAGATGGACATCGACGCAGCCATTGAGACGTACAACCTGCTGTCAGAGAAG-- 12161 Query 248980 TGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGC 249039 ||| | || || ||| | || |||||||||||||| || ||| || |||||| | Sbjct 12160 TGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCC 12101 Query 249040 TCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAA 249099 ||||| || || |||||| |||||||| |||| |||||||| |||||||| || Sbjct 12100 AGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACGCTGAAG 12041 Query 249100 CAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGA 249159 || || | | || |||| || || ||||| ||| | | | | |||| || Sbjct 12040 CAATGCGCCCTGGTCTCCAAATCAGCCGGGGGAATTGGTGTGGCGATAAGCTGCATCAGA 11981 Query 249160 GCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTT 249219 | | ||| |||||| || || || || | | || ||||| ||| | || Sbjct 11980 ACAACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGATCGTCCCCATGCT- 11922 Query 249220 CGATGCTTTGAGTCCAC-CGCCAGGTT-CATCAACCAGGCCGGGCGCCGAAAG----GGG 249273 || ||| | || || || ||| | || |||||| | ||| | | || || Sbjct 11921 -GAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGC-GGCAACAAGAGACCAGGA 11864 Query 249274 TCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAA 249333 | ||||||||||| |||| ||||||||||| | || || |||||||| | || Sbjct 11863 GCCTTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAG 11804 Query 249334 AAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCC 249393 ||||||| ||| || ||| |||||| | ||||| ||||||||||||||| || || Sbjct 11803 AAGAACACCGGAAAGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGGCCTGTGGATCCCC 11744 Query 249394 GACTTGTTCATG 249405 ||| |||||||| Sbjct 11743 GACCTGTTCATG 11732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071476469668864