Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq51664 471 4e-128 seq120612 123 2e-23 >seq51664 Length=13532 Score = 471 bits (522), Expect = 4e-128 Identities = 1038/1541 (67%), Gaps = 33/1541 (2%) Strand=Plus/Plus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 ||| |||||| || | | |||| ||||||| ||||||| |||| || | |||||| Sbjct 10791 TCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAAC 10850 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||| | ||| | ||| ||| |||||| ||| | | ||||| || || ||| Sbjct 10851 TCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 10910 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| |||| ||| || ||| ||| Sbjct 10911 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 10970 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| | | || || ||| |||| | ||||||| ||| |||| ||| || Sbjct 10971 ACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTC 11030 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| |||| | ||| || | || |||| ||||||| Sbjct 11031 ---TTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTC 11087 Query 22709 TCGTACGGACCATATATCG-CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| || || | ||| |||| || |||||||||||||||| ||| ||| || || Sbjct 11088 TCGTAGGGGCCG-AGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGAT 11146 Query 22768 AGTCTCGAAGATTTTCTTGTTCAATTCGGC--GGCGGCGACGCTTTCGTACGGCATACGC 22825 ||||||||||| | |||| | || || | |||||||| |||| |||| Sbjct 11147 GACCTCGAAGATTTGAATATTCA--GCAGCTGAGCCTCTTCGCTTTCGAACGGGTAACGC 11204 Query 22826 ATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGA 22885 || | | ||| || ||||||| ||| || ||||| || || ||||| | || | Sbjct 11205 ATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTG 11264 Query 22886 TTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTT 22945 || ||| || || ||||||| ||||| | || ||||| | ||||||| || Sbjct 11265 TTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTC 11324 Query 22946 CTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--TGTA 23003 || | | ||| || | | |||||| ||| | ||| | | Sbjct 11325 TTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTC--AAAAGTCCGCTCCGGGG 11382 Query 23004 CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACG 23063 || || |||||| || || ||||| ||||| || || || ||||| || | | | Sbjct 11383 TGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGG 11442 Query 23064 TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGT 23123 ||||||| | ||||| || || || ||||| |||| || ||||||| ||| |||| Sbjct 11443 TGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGT 11502 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCG 23183 |||| || | ||||| | || ||||| |||||||| |||||||| || || ||| | Sbjct 11503 TGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGGG 11562 Query 23184 ACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGTCGCACGTACCTGCCTTCT 23242 ||||||| | || |||||| ||||| | | | |||| ||| | || | || | Sbjct 11563 ACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACG-CGCTTGAACTTCCCCTGC 11621 Query 23243 TCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGC 23302 | ||| || ||| | | || || || | || | || ||| ||| || || Sbjct 11622 TTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGG 11681 Query 23303 GATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGA 23362 | | | |||||||| ||| ||| || | || || | |||| || || Sbjct 11682 CACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGG 11741 Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 || || ||||| || ||||||| || || | ||| | | |||||| || ||||||||| Sbjct 11742 TCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTC 11801 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 || || | |||| ||||| |||||||| || ||||| ||||| ||||| | ||| || Sbjct 11802 TTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAG 11861 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 || || |||||||| ||||||||||| ||||||||||| |||||||||||||| ||||| Sbjct 11862 GCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTC 11921 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTT 23599 ||||| || |||| |||||||| |||| ||| || | ||| || || Sbjct 11922 AGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC---CCCGTT 11978 Query 23600 GCTCGAACGTTG-TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA 23658 | || | | | | | || | ||| || || ||| | ||||| || | || ||||| Sbjct 11979 GTTCTGATGCAGCTTATCG-CCACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCA 12037 Query 23659 TTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACA 23718 ||| ||||| |||||||| ||||| ||||||||||| ||||| | |||| || ||| || Sbjct 12038 TTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCA 12097 Query 23719 CGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAA 23778 |||| || | || || | || ||| || || ||| |||||| || || Sbjct 12098 GCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAA 12157 Query 23779 GTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC-TCTCCG 23833 ||| ||| |||| || |||||||| || ||||| || || |||||| ||| | Sbjct 12158 ----CCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCT-TG 12212 Query 23834 TGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTA 23893 || || |||| ||| || | ||| | ||||| || |||| |||| || |||||| Sbjct 12213 TGGATCCCGACGGCCACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTG 12272 Query 23894 ATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 || || ||||| || || || | || || || || || || Sbjct 12273 ATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAA 12313 >seq120612 Length=9325 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| || || || ||||| | ||| | ||||| || | ||| | Sbjct 2193 TTTCCACTCGTTTCATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCC 2134 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 2133 TCTGCTCCTCTTTACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCC 2074 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 2073 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 2038 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||||||||| || || || || |||||||| | || || || Sbjct 2722 CACCTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGT 2663 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| ||||| Sbjct 2662 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGT 2603 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||| || ||| |||||| |||||||| || ||||| Sbjct 2602 GCCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACA 2565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444838938428160