Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq51664 147 2e-30 seq158314 84.2 2e-11 >seq51664 Length=13532 Score = 147 bits (162), Expect = 2e-30 Identities = 851/1351 (63%), Gaps = 15/1351 (1%) Strand=Plus/Plus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || || || || || | |||||| ||||| || | || || | || || || ||||| Sbjct 10827 AGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTG 10886 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| |||||||| || || | | || || | || || || || ||||| Sbjct 10887 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 10946 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || |||| || || | || ||| || || ||| Sbjct 10947 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTC 11006 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||| | || || || ||||| |||||| || || || || || || || || Sbjct 11007 CAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTG 11066 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | ||||| | || ||||| || || ||| || || ||||| || | Sbjct 11067 ACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCC 11126 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || ||||| | || || ||||| ||||| ||||| | | | || |||||| Sbjct 11127 TCCAGGGCGGCGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTCG 11186 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || ||||| | || | || | || || |||| |||||||| || || || || || Sbjct 11187 CTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCA 11246 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || || || ||| || || | || ||| ||||||||| || || || || Sbjct 11247 ATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCG 11306 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CA 37660 || || || || | ||| || || | || ||| || | | || || | || || Sbjct 11307 ATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCA 11366 Query 37661 TAAATACGTTATTAT-TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 || | || | | || | | | | || ||| || | |||||||| || || Sbjct 11367 AAAGTCCGCTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCT 11426 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 || ||||| | | | | | | || || ||||| || || || || || | || || Sbjct 11427 ACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTG 11486 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||| ||| ||| ||| || | || || | ||||| || || || || ||||| Sbjct 11487 CCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTG 11546 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGAT-CG 37897 || |||| | || | |||||||| | | ||| || || || || || || | || Sbjct 11547 CCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAA-CTGCTGAGCCTTCACCACGCG 11605 Query 37898 CTTTAAtttttttCTTTGTTTCGTATTCTA--TATATAATTTGTTAAAATCATTCCCCCA 37955 ||| || || | || ||| || | | || | || | || || | |||||| Sbjct 11606 CTTGAACTTC---CCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCA 11662 Query 37956 TACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTC 38015 ||| || ||||| || ||| |||||||| |||||||| || || | | || Sbjct 11663 GCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTC 11722 Query 38016 TACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA-TCTTTGGTTCTAT 38074 || | | ||| || | || || | ||| | || ||| | || || ||| ||| | Sbjct 11723 CACTCTCTTCATGAACAGGTCGGGGATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCT 11781 Query 38075 ATTCTTCGTTCCCTACATTCTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCAT 38133 || || || || ||||| ||| |||| || || || || | || |||||||| Sbjct 11782 GCTCCTCCTTTCCGGTGTTCTT-CTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAG 11840 Query 38134 GGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTA 38193 || || | || || | | ||||||||||| || | || ||||| | | || | Sbjct 11841 GGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGT 11900 Query 38194 ACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCG 38253 | ||||| || || | ||| | ||| || || || || || || |||||||| | ||| Sbjct 11901 GCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCG 11960 Query 38254 GATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGT 38313 | || || | ||| | | || || ||||||| || || ||||| || || | Sbjct 11961 GCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGAT 12020 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || || | | |||||||| || | ||| || | || ||||| || ||||| || || Sbjct 12021 TTGGAGACCAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTC 12080 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 || | || | || || || |||| || ||| ||||| ||||| || | || Sbjct 12081 ATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTG 12140 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACA 38464 || || || || ||||||| || || |||| Sbjct 12141 GGGGAGGCGTGGGTGAACCACTTCTCTGACA 12171 >seq158314 Length=2971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || ||||| || || || || || | |||||||||| |||| || || Sbjct 1943 TCGTCTCTGCTGATTAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCTCTCTTCTTC 1884 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || | || || |||||||| ||||| ||||||||||| || || || || Sbjct 1883 AGCCAGAAGATGGAGGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGGCC 1824 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 1823 ACCACACGCTCTCC 1810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467549987301120