Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq48423 95.1 1e-14 seq115624 86.0 6e-12 >seq48423 Length=831 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||||||| ||||| || ||||| |||||||| || || ||| ||| ||| Sbjct 1 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTTGCTTTA 60 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| ||||||||||||| | ||| | ||||| ||||||| || Sbjct 61 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTC 120 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 121 TTCACGAAGATCTGCAT 137 >seq115624 Length=278 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/219 (68%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 |||||| || | ||| | || || ||||| || ||||| || ||| | |||| Sbjct 60 ACGCAAGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 119 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTG------------ATCGGGAGG 139656 |||||| ||||| || |||||| |||||||||| ||||| ||| ||||| Sbjct 120 GTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGNNNNNNNNNNNNATCTGGAGG 179 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| |||||| || | | ||| | | || |||||||||| Sbjct 180 GATGCCCTCTTTGTCCTGGATTTTAGCCTTGACGTTTTCAATGGAATCACTGGGCTCCAC 239 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 ||| | ||| | ||||| || |||| || || ||||| Sbjct 240 CTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACGAA 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495031889241600