Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq51664 495 5e-135 seq158314 114 2e-20 seq108610 87.8 3e-12 >seq51664 Length=13532 Score = 495 bits (548), Expect = 5e-135 Identities = 1291/1946 (66%), Gaps = 27/1946 (1%) Strand=Plus/Plus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 10779 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 10838 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 10839 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 10898 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || |||| || Sbjct 10899 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 10958 Query 79177 AAACTATTTCTAAGACCGTATGATCT-GATTTTATCTTTTAG-AGATTCCCAATCCCAAA 79234 | || || || | |||| ||| ||| || || || || || |||| | ||| | Sbjct 10959 AGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAGCAGCTTCC-AGTCCAGCA 11016 Query 79235 GATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATC 79294 | || | || | ||| | || || || || || || || || || || | Sbjct 11017 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGC 11076 Query 79295 CTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 ||| ||| || || || || || || |||| | || || |||||||| | || Sbjct 11077 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 11136 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 ||| || ||| ||||| || | |||| || || || ||| ||| || || | Sbjct 11137 CGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTCGCTTTCGAACG 11196 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 | ||| | ||| || || || || || || ||||| || ||||| || || || || | Sbjct 11197 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 11256 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | ||| || || |||| ||||| || | ||||| || ||||| || || || || | Sbjct 11257 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGT 11316 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA- 79593 | | |||| |||| ||||||||| |||| ||||| ||| ||||| |||| Sbjct 11317 TCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAA-GTCCGC 11375 Query 79594 TCTA---TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT-- 79648 || | || ||||||| | ||| | || ||||||||||| || |||||||||| Sbjct 11376 TCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCG 11435 Query 79649 TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 | || | || | || ||||| ||||| ||||| || |||| ||||| || | || Sbjct 11436 TGGCTGGTG--TACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGAT 11493 Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768 | ||||| || ||||| |||| || || || || || || ||| | || || ||||||| Sbjct 11494 TCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTT 11553 Query 79769 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTA- 79826 | |||| || || |||| || | ||| | | || ||||||| | | |||| | Sbjct 11554 CTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAAC 11612 Query 79827 -TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883 || | | ||||| | | ||||| | | ||||||||| || ||||| || Sbjct 11613 TTCCCCTGCTTCTCATAGGAG--GTGTAGAGCTT--TTCGAACTCCTCCCCCCAGCACTC 11668 Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943 ||| || || || || |||| |||||||||| ||||| || | | || |||| Sbjct 11669 GTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCT 11728 Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCT 80002 ||||| || || || || ||||| || | || ||| || || |||| ||| ||||||| Sbjct 11729 CTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCT 11787 Query 80003 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 80062 | ||||| || ||||| || || || ||||| | | | || | ||||| || |||| Sbjct 11788 CCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCA 11847 Query 80063 AGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 80122 ||| ||||| | |||| |||| ||||| || ||||| || | ||| | || |||| Sbjct 11848 GGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGT 11907 Query 80123 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATAT 80182 | || |||||||||| ||| || | || || ||||| | || ||||| |||| ||| | Sbjct 11908 TGTTGTAAACTCTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGT 11967 Query 80183 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 |||| || | | | || || || | | ||| |||||||| || ||| |||| Sbjct 11968 AGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGA 12027 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 | |||||| | || | ||| || || ||||| || ||||| || || ||||| | Sbjct 12028 CCAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGA 12087 Query 80303 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 80362 | || || ||||| |||| || | | | ||||| || || || | || || || | Sbjct 12088 GCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGG 12147 Query 80363 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 80422 |||| || ||||| || || ||||| || |||||||||||||| |||| || || ||| Sbjct 12148 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCA 12207 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 | || || || || || || | ||| | ||||||||| |||| || | | ||| Sbjct 12208 TCTTGTGGATCCCGACGGCCACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGC 12267 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542 || || ||||||| ||| || |||| ||| || || || || ||||||| || | Sbjct 12268 CGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGA 12327 Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 80602 | |||| ||| |||| || |||||||||| || || | | | ||| | || | Sbjct 12328 AATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGA 12387 Query 80603 TGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAAT 80661 || | ||| || || || || || || ||||| || || | |||||| | Sbjct 12388 GCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTAC 12446 Query 80662 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 80721 | ||||||||||| ||||| || | || || || || ||||| || ||||| ||||| Sbjct 12447 AGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCG 12506 Query 80722 ATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 80781 || | || || | ||||| || || || || | || || |||||| | || || Sbjct 12507 ATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCA 12566 Query 80782 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 80841 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 12567 GCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTC 12626 Query 80842 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATA 80901 || | || | ||||| | |||| ||| | || || || | || || Sbjct 12627 ATGGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATG 12686 Query 80902 CGAGACGTGATTTTATCAAACATGAC 80927 ||| | |||||||| || |||||||| Sbjct 12687 CGACAAGTGATTTTGTCGAACATGAC 12712 >seq158314 Length=2971 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || ||||| |||||||| || || || |||||||| ||||| | ||| | Sbjct 1945 CCTCGTCTCTGCTGATTAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 1886 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || ||||| || || || ||||| ||||||||||| || || || || |||| Sbjct 1885 TCAGCCAGAAGATGGAGGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 1826 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 1825 CCACCACACGCTCTCC 1810 >seq108610 Length=4066 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || || ||||||||||| || || || || | || || | | Sbjct 457 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 516 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||| || || |||| || ||| |||||||| | || |||||||||||||||| Sbjct 517 GAGCATAGTCAGGGTGTTTGGTGGTAAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 576 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || || ||| | || | || ||||| |||||||| Sbjct 577 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716774369934720