Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq51664 464 8e-126 seq158314 96.9 5e-15 seq108610 96.9 5e-15 >seq51664 Length=13532 Score = 464 bits (514), Expect = 8e-126 Identities = 1234/1865 (66%), Gaps = 33/1865 (2%) Strand=Plus/Plus Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 || || ||||| || |||| | |||||| || | || | || |||||||| || Sbjct 10779 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 10838 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 10839 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 10898 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 10899 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 10958 Query 71260 AGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAG-AGATTCCCAATTCCAAA 71317 || || || || | || || ||| | ||| || || || || || |||| | |||| Sbjct 10959 AGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGC 11015 Query 71318 GATCCGATGG--TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 | || ||| | | | ||||| || || || || Sbjct 11016 AGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGG-ATGCCCTTGCTGACGGGAGA 11074 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||||| || || ||||| || || | |||| || || || |||||||| | || Sbjct 11075 GCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGC 11134 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 | | || ||| ||||| || | |||| || || || || ||| || || Sbjct 11135 GGCGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTCGCTTTCGAA 11194 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 || ||| | ||| || || || || || || ||||| |||||||| || || || || Sbjct 11195 CGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCT 11254 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 ||| | ||| || || |||| ||||| || | ||||| || ||||| || || || || Sbjct 11255 GTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTT 11314 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 || | ||| |||| ||||||||| |||| ||||| ||| ||||| ||| Sbjct 11315 GTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCG 11374 Query 71676 ATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 71731 || | || ||| ||| | |||| || ||||||||||| || |||||||||| Sbjct 11375 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC 11434 Query 71732 -TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | || || || | || ||||| ||||| || || || |||||||||| || | | Sbjct 11435 GTGGCT--GGTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGA 11492 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 || ||||| || ||||| |||| || || || || || || || | || || |||||| Sbjct 11493 TTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTT 11552 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTA 71909 || |||| || || |||| || | ||| | | || ||||||| | | |||| | Sbjct 11553 TCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAA 11611 Query 71910 --TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965 || | | ||||| | | ||||| | | ||||||||| || ||||| ||| Sbjct 11612 CTTCCCCTGCTTCTCATAGGAG--GTGTAGAGCTT--TTCGAACTCCTCCCCCCA-GCAC 11666 Query 71966 T-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC-TCCATCATCATTTAC 72023 | ||| || || || || || || |||||||||| ||||| || || | || | || Sbjct 11667 TCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTC-TCCAC 11725 Query 72024 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCT 72082 || ||||| || || || || ||||| || | || ||| || || |||| ||| |||| Sbjct 11726 TCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCT 11784 Query 72083 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 72142 |||| ||||| || ||||| || || || ||||| | | | || | ||||| || | Sbjct 11785 CCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCT 11844 Query 72143 CCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 72202 ||| ||| ||||| | |||| || | ||||| || ||||| || | ||| | || | Sbjct 11845 CCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCG 11904 Query 72203 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 72262 |||| || |||||||||| ||| || | || || ||||| || ||||| |||| || Sbjct 11905 TGTTGTTGTAAACTCTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGA 11964 Query 72263 TATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 | ||||| || | | | || ||| || | | ||| |||||||| || ||| | Sbjct 11965 TGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGG 12024 Query 72323 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 ||| | |||||| | || | ||| || || ||||| || || || || || ||||| Sbjct 12025 AGACCAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGG 12084 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 || || || ||||| |||| || | | | ||||| || || || | || || | Sbjct 12085 CGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGG 12144 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502 | ||||| || ||||| || || ||||| || |||||||||||||| |||| || || | Sbjct 12145 AGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGT 12204 Query 72503 CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 || | || || || || || || | ||| | ||| ||||| |||| || | | | Sbjct 12205 CCATCTTGTGGATCCCGACGGCCACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTT 12264 Query 72563 TGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622 || || || ||||||| |||||| |||| ||| || || || || ||||||| | Sbjct 12265 TGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 12324 Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682 | || |||| ||| |||| || |||| ||||| || || | | | ||| || | Sbjct 12325 AGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGT 12384 Query 72683 CCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741 | | || | ||| || || || || || || ||||| || || | |||||| Sbjct 12385 CGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTG 12443 Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801 | | ||||||||||| ||||| || | || || || || ||||| || ||||| ||| Sbjct 12444 TACAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACG 12503 Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATT 72861 || || | || || || ||||| || || || || | || || |||||| | || Sbjct 12504 GCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATC 12563 Query 72862 TCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACC 72921 || || ||||| ||||| | || || || || || || | || | || ||||| ||| Sbjct 12564 TCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACC 12623 Query 72922 TTCAT 72926 ||||| Sbjct 12624 TTCAT 12628 >seq158314 Length=2971 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || |||| |||||||| || || || |||||||| ||||| | ||| | Sbjct 1945 CCTCGTCTCTGCTGATTAGCTCGTTGGAGAAGGTCAGACCGGGCATCAGGCCTCTCTTCT 1886 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || || || || || ||||| ||||||||||| || || || || |||| Sbjct 1885 TCAGCCAGAAGATGGAGGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCAGCGAAGG 1826 Query 42207 C 42207 | Sbjct 1825 C 1825 >seq108610 Length=4066 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||||||||| || || || || | || || || | Sbjct 457 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 516 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| || || |||| || ||| |||||||| | ||||||||||||||||||| Sbjct 517 GAGCATAGTCAGGGTGTTTGGTGGTAAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 576 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || || ||| | || | || ||||| |||||||| Sbjct 577 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669742827780480