Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq51664 131 2e-25 seq142310 86.0 9e-12 >seq51664 Length=13532 Score = 131 bits (144), Expect = 2e-25 Identities = 348/528 (66%), Gaps = 24/528 (5%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| || | || || ||||| ||| | ||||| | | |||| Sbjct 11956 ACCAACGGCAACTCCAACGGGATCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGT 11897 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || | ||||| || | ||| | ||| |||| || ||| Sbjct 11896 TACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTCGCCATGTACCTGGAGCCCTGG 11837 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||||| |||||||| | ||| | || ||| | || || ||| || Sbjct 11836 CACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGAGA 11777 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||||||| | || || | || ||| | || || ||||||||||| | || | Sbjct 11776 GCCAGGGACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGC 11717 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||||| | ||||| || ||||| ||| || || || || || ||| ||| Sbjct 11716 AACGAGG------ACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTGC 11663 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTG 97157 ||||| || ||||| || ||| ||||| |||| ||| | |||| || | | Sbjct 11662 TGGGGGGAGGAGTTCGA---AAAGCTCTACACCTCCTATGAGAAGCAGGG--GA-AGTTC 11609 Query 97158 AGACGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACT 97214 | || || | | || | | ||||| | ||| | | | | ||| ||| ||| Sbjct 11608 AAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACT 11549 Query 97215 GGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTG 97274 || || || ||||| || ||||| || || || | || |||||||||| | || Sbjct 11548 GGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTG 11489 Query 97275 GGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 |||||||||||| | ||| |||||||| ||||| | |||||| || Sbjct 11488 GGCACCATCAAGTCCAGCAACCTGTGCACAGAAATCATCGAGTACACC 11441 >seq142310 Length=1461 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| ||||| || || |||||||||||||| || || || || |||||||||||| Sbjct 941 GTGGCTTTCGCGGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGG 882 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAG 125534 ||||||||| | ||||| ||||| || || || || |||||| Sbjct 881 CTCAAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAG 837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739517352228480