Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq48423 114 3e-20 seq115624 105 2e-17 seq5354 86.0 1e-11 >seq48423 Length=831 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || ||||| || ||||| |||||||| ||||||||||| Sbjct 1 GCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTTGCTTTA 60 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| || || || || ||||| || || || ||||| || || || || Sbjct 61 ACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGGGTC 120 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || |||||||||||| Sbjct 121 TTCACGAAGATCTGCATTTTG 141 >seq115624 Length=278 Score = 105 bits (116), Expect = 2e-17 Identities = 142/200 (71%), Gaps = 12/200 (6%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||||||||| || || ||||| || || || | |||||||| || || |||||| Sbjct 79 GTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCA 138 Query 104423 GCAAAAATTAGCCTCTGTTG------------ATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || || | ||| || ||| ||||| || || ||||| ||||| Sbjct 139 GCAAAGATCAGACGCTGCTGNNNNNNNNNNNNATCTGGAGGGATGCCCTCTTTGTCCTGG 198 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || || ||||| | || ||| || || || ||||| || || || ||||| Sbjct 199 ATTTTAGCCTTGACGTTTTCAATGGAATCACTGGGCTCCACCTCCAGGGTGATGGTCTTT 258 Query 104531 CCAGTAAGTGTTTTTACAAA 104550 ||||| || || || || || Sbjct 259 CCAGTCAGGGTCTTCACGAA 278 >seq5354 Length=6289 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 268905 AGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAG 268964 ||| |||||| || ||||| ||| | |||||||| | | || ||| | ||||||||| Sbjct 789 AGAGGTTCTGCCAGGAGGTGCAGGTCCCTGAAGCACGCTCGTTCTACAGCTTCCAGATAC 730 Query 268965 CTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||| | ||||||||||||||||||||| || | || | ||||| || Sbjct 729 TTATAGAGACTATTCATTCAGAGATGTACAGCCTGCTCATCAACACTTACAT 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148942910501184