Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq137484 127 1e-24 >seq137484 Length=8150 Score = 127 bits (140), Expect = 1e-24 Identities = 125/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||| || || || ||||||| ||||| Sbjct 3822 GCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGCACCCCGAGACCCATA 3881 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || || | |||||||||||||||||| ||||| |||||| |||||| || ||||| Sbjct 3882 TCACCA-GAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCACACGTAGAATTGACA 3940 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCT 25665 || ||||| ||| || || ||||| || ||| || |||| Sbjct 3941 CAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTCT 3980 Score = 123 bits (136), Expect = 2e-23 Identities = 136/179 (76%), Gaps = 9/179 (5%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||||| |||||||| || || || | |||||||||||| || ||||| ||||| ||||| Sbjct 5629 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 5688 Query 25833 TCCATCTTC----CCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGG 25888 || || || ||||| |||||| || |||| |||| | ||| ||||||| Sbjct 5689 GCCTTCCTCTCGATCTGTG----AAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGG 5744 Query 25889 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 25946 ||||||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 5745 CGTCCCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 5803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339447601966704