Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq59648 136 6e-27 seq123429 129 8e-25 seq55935 129 8e-25 seq125785 95.1 2e-14 >seq59648 Length=15200 Score = 136 bits (150), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 |||||||| | || |||||| || ||||| ||||| || |||||||| |||| ||| Sbjct 9686 TTGACGATGTCGAAGCCCACGCTGCCTCCGAACGTGCTCGGCTTCCAGTACTCCGGTGAG 9745 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| ||| |||| | ||| |||||||| | || ||||||| ||| | ||| || Sbjct 9746 CAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTC 9805 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||||||||||| |||||||| ||||||| | || | ||| | ||||| Sbjct 9806 TCCCCAAAGATGGCGTTGGTCCGGGGCTTCTCCACCAGCAGACCCGGGTAGAGTTCCACG 9865 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||| || || || | || || | || || ||||| || ||||||| Sbjct 9866 GCGTCGACGTGCCCATAGAACTCCTCCAGCACTGCTGCCATTTCTTTCTCTCCTG 9920 Score = 95.1 bits (104), Expect = 2e-14 Identities = 166/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||| || |||||||| || || ||||| ||| | || || | |||| Sbjct 11617 ATGAGCCGTGTGGTCTGGAAGAGCCTCTCGTCGTCCCAGCCCGGGTGGACCTCCTTCAAC 11676 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 || || ||||| | ||||||||| | |||||||| || ||||||||||| || || || Sbjct 11677 ACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCGGGG 11736 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||||||| || ||||| || || ||||| | || | ||||| || | ||||| Sbjct 11737 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACGTGAGGAGGG 11796 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 ||| ||||| || || || || || | |||||||||| || || || | || | Sbjct 11797 TAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACACCTCTCCATCCAGAACC 11856 Query 9862 TG 9863 || Sbjct 11857 TG 11858 Score = 91.5 bits (100), Expect = 2e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| || ||||| || || || || ||||| || || || | | |||||||| | Sbjct 10758 CTTACCCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCC 10817 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | | ||| || ||| | || || | | |||| |||| | | | ||||| | Sbjct 10818 GTCACCACGGAGTTATTGAAGACAAACTGTTTATAGTTGTACTCTTTCTCCTCAATGTGG 10877 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | ||| ||||| |||| |||||||| |||| |||| |||||||| | || || Sbjct 10878 AAAGTATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGCGG 10937 Query 9502 TTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 || ||||||||||| || | || ||||| ||||| | |||| | || |||| Sbjct 10938 TTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTT 10996 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 |||||||| || ||||| || || Sbjct 10997 ATAGCCGCTCAGGTGCTGCACGTA 11020 >seq123429 Length=10729 Score = 129 bits (142), Expect = 8e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 ||||| || ||||||||||| |||||||| | |||||||||||| ||| |||| ||| Sbjct 3 TCTCCTCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTGCCAGCAGG 62 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| ||||| || ||||| |||| ||| | || |||||||| ||||| | | || Sbjct 63 CCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATACCAGTAGGG 122 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | ||||| | || | |||| ||| ||||||| ||| || ||||| ||||| || Sbjct 123 CGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCACCGTAGAG 181 >seq55935 Length=8550 Score = 129 bits (142), Expect = 8e-25 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 ||||| || ||||||||||| |||||||| | |||||||||||| ||| ||| ||| Sbjct 8187 TCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTTCCCAGCAGG 8128 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 || || ||||| || ||||| |||| ||| | || |||||||| || | ||||||| Sbjct 8127 CCCTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAACAGTCTGTTGGGA 8068 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | || |||| || || |||| ||| ||||||| ||| || ||||| ||||| || Sbjct 8067 CGTGTTTTCTCCAGCAGGATGCCGGGGTAGAACTCCAAAGCATCTATGTCACCGTAGAG 8009 >seq125785 Length=15263 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || |||||||||||||| ||||||||| | || || || || || Sbjct 12563 CAAAGCCGACTTTGCCTCCGAAGGTGCTGGGCTTCCAGTAATCTGGAGAACATATAGGGT 12504 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| ||||| || || || |||| ||| | |||||||| || || | Sbjct 12503 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCGCCCATCTCTATCATGCTCTCTCCAAATA 12444 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | |||| || || || | ||| || || ||||| || |||| Sbjct 12443 TGGCCCCCTGTCGTGTTCCCTCCAACAGTAAACCAGGGTAAAATTCAACAGCATCAATGT 12384 Query 8931 CTCCGTA 8937 | ||||| Sbjct 12383 CACCGTA 12377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707050643301120