Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq64860 154 2e-33 seq82501 109 9e-20 seq30716 104 4e-18 >seq64860 Length=5635 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| || ||||| || || || || Sbjct 3773 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGGATCACTAAACCCGCCAT 3714 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||||||||| |||||| | || || || |||| || |||| Sbjct 3713 CCGCCGCCTGGCTCGCCGTGGTGGAGTGAAGCGTATTTCCGGTCTGATCTACGAGGAGAC 3654 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||| | | | ||| |||| |||||| || ||| ||||| Sbjct 3653 CCGCGGTGTGCTCAAGGTGTTCTTGGAAAACGTGATCCGTGATGCCGTCACCTACACCGA 3594 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| ||| | |||||||| ||| ||||||| | || || || ||||| | || || Sbjct 3593 GCACGCAAAAAGGAAGACTGTGACCGCCATGGACGTGGTGTACGCTCTGAAAAGGCAGGG 3534 Query 16672 CCG 16674 ||| Sbjct 3533 CCG 3531 >seq82501 Length=1133 Score = 109 bits (120), Expect = 9e-20 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| |||||||||||||| |||||||| | ||||||||| |||||| Sbjct 396 CTCCGTGATAACATCCAGGGAATCACCAAGCCCGCTATCCGCCATCTGGCTCGCCGTGGT 337 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 ||||| ||| || ||| || || |||| || |||| ||| ||| |||||| ||| Sbjct 336 GGAGTGAAGTGTAACTCCGGTCTGATCTACGAGGAGACCCGTTGTGTGTTGAAGGTCT 279 >seq30716 Length=2628 Score = 104 bits (114), Expect = 4e-18 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | | || || ||||||||||| ||||||||||| || |||||| Sbjct 2519 GCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGAATCACCAAACCCGCTATC 2578 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTA 16542 || ||||||||||| ||||| ||||| |||||| |||| || || |||| Sbjct 2579 CGCCGTCTGGCTCGCCGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTA 2628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78923015428464