Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq51664 147 6e-30 >seq51664 Length=13532 Score = 147 bits (162), Expect = 6e-30 Identities = 599/934 (64%), Gaps = 34/934 (4%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| ||||| |||||||| | ||||| || | | | || Sbjct 12313 TTCGGCTTCAAGACTCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAAGTGGCCGAG 12254 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || |||||||| ||| | ||| | || || | || ||||| ||| | || || Sbjct 12253 CGACCGCAGCACATGCTCATGAGAGTGGCCGTCGGGATCCACAAGATGGACATCGACGCA 12194 Query 363511 GCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTATTCACGCACGCCACGCCAACAA 363568 || ||||| || || || || || || | ||| ||||| |||||| | || || Sbjct 12193 GCCATTGAGACGTACAACCTGCTGTCAGAGAA-GTGG-TTCACCCACGCCTCCCCCACGC 12136 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || ||||| | |||||| |||| ||||| || || ||||| | Sbjct 12135 TCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAG 12076 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 |||| |||||| || || | ||||| || ||| | || || || | ||||| | Sbjct 12075 ACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTGGTCTCCAAATCAG 12016 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACA-------GTTACATT 363741 | || ||||||||||| |||| || | | | ||||||| | ||||| Sbjct 12015 CCGGGGGAATTGGTGTGGCGAT----AAGCTGCAT---CAGAACAACGGGGAGCTACATC 11963 Query 363742 CGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 |||||| || |||| || ||| | || |||||||| | || | |||| || Sbjct 11962 GCCGGCACCAACGGCAACTCCAACGGGATCGTCCCCATGCTGAGAGTTTACAACAACACG 11903 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || | |||||||||||||| || ||| | ||| || || || ||||| || ||| Sbjct 11902 GCACGTTACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTCGCCATGTACCTGGAG 11843 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || || ||||| | ||||| || || ||||| ||| ||||| ||||| ||||| Sbjct 11842 CCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAG 11783 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | | || | || || ||||| | || ||| | | |||| || |||||| | ||| Sbjct 11782 CAGAGAGCCAGGGACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAAGAGAGTG 11723 Query 363982 GAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGT 364040 ||| ||| || | ||||| || | || || |||| || ||||| | ||| Sbjct 11722 GAGAGCA-ACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTG 11664 Query 364041 ATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGAATCGGAGGGAAAG-----G 364093 ||||| || || | | |||||| || ||||| | |||| ||| | Sbjct 11663 CTGGGGGGAGGAGTTCGAAAAGCTCTACAC--CTCCTATGAGAAGCAGGGGAAGTTCAAG 11606 Query 364094 CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153 | ||| | || || ||| || | ||| ||| | || || || |||| || | Sbjct 11605 CGCGT-GGTGAA----GGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAA 11551 Query 364154 CAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACC 364213 | || || || || ||| |||||||||| | |||||| | ||| |||||| ||| | | Sbjct 11550 CTGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATC 11491 Query 364214 TTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 | || || || || |||||||| || || || || || || |||||| | ||| | Sbjct 11490 TGGGCACCATCAAGTCCAGCAACCTGTGCACAGAAATCATCGAGTACACCAGCCACGATG 11431 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 || || || ||||| || || || || ||||| Sbjct 11430 AGGTAGCGGTGTGTAATCTGGCCTCAATTGCGCT 11397 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||||||||| || || || |||||||| || |||||||||| | ||||| | Sbjct 10951 GCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCC 10892 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | || ||||| | || | ||| |||| || |||||||| |||| | | || || Sbjct 10891 TACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCT 10832 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || |||| || || | || | ||||||||| | || ||||||||| | | Sbjct 10831 CATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGAGCGAGGAGATGAAGAACCAGCTG 10772 Query 364930 ATCGC 364934 ||||| Sbjct 10771 ATCGC 10767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300574048562336