Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq51664 203 3e-47 seq120612 118 1e-21 >seq51664 Length=13532 Score = 203 bits (224), Expect = 3e-47 Identities = 964/1511 (64%), Gaps = 48/1511 (3%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||||||||| |||| | || | || || | ||| ||| ||| | Sbjct 10836 TTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCT 10895 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || |||||||| |||| | Sbjct 10896 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 10955 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| | ||| | ||||| ||| ||| ||| Sbjct 10956 AGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGC 11015 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || ||||||||||||||||||| ||||||| |||| |||| | Sbjct 11016 AGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAG 11075 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 ||| | | ||| ||| || | | || |||||||| ||||||||||| | Sbjct 11076 CCTGCGTACGTCTCGTAGGGGCCG--AGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGG 11133 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || |||| ||||| | || |||||| || || ||||| ||| Sbjct 11134 CGGCGTGGTAGATGACCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTCGCTTTCGA 11193 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||| |||| || | || ||||| || | || || | || | || || |||| Sbjct 11194 ACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCC 11253 Query 145476 GATGTTTCATGTTG--CTCATCCTCGCCG---ACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| || ||| | || ||| ||||| | | ||| ||||| Sbjct 11254 TGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTA-ATT----TCGAT 11308 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCA 145588 || || ||||| || || | ||| || || | |||| | |||| ||||||| Sbjct 11309 GATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATGCC--AGTTTTTTAAAGTCA 11366 Query 145589 AA---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 || ||| || | ||| || | |||| || || || |||| |||||| Sbjct 11367 AAAGTCCGCTCCGGGGTGACGTACA------TGTTGAGCGCAATTGAGGCCAGATTACAC 11420 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || || ||| ||| | | |||| | | ||| || | ||||| ||||| | ||| Sbjct 11421 ACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTG 11480 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| |||||||| || || || || ||||||||||| ||||| ||||| |||||||| Sbjct 11481 ATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTAT 11540 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG---CAAGTCCTGCGCACGC 145822 || |||||| || ||| | || |||||| ||| ||| | ||| || | Sbjct 11541 GGCGTGCCAGTTTCTGTCTGGGACT---CGATAACGGCGTGCCACAACTGCTGAGCCTTC 11597 Query 145823 ACCTGCTGCTGGTAGCGGCCCT-CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 ||| ||| | | |||| |||| || || ||||||||| || ||| | Sbjct 11598 ACCACGCGCTTGAACTTCCCCTGCTTC-TCATAGGAGGTGTAGAGCTTTTCGAACTCCTC 11656 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 || |||| ||| || || || |||| ||||||||||||||| ||||| | |||| Sbjct 11657 CCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTT 11716 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GC 145999 | | || | || ||| |||| || || | |||||| |||| | | ||| | || Sbjct 11717 GCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGC 11776 Query 146000 GCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCG 146059 || ||| ||||| || |||| ||| | | || | | | | ||| ||| Sbjct 11777 TCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCG 11834 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCT--TTTCGT-TTGCCACCCTGGTCCACG 146116 ||||| || || | || | ||||| ||||||| | || | ||||| |||||||| ||| Sbjct 11835 TGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACG 11894 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176 | |||| || ||||||| | || | || |||||| ||| ||| ||| |||||| Sbjct 11895 TAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTG 11954 Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 || | || | | || | | | ||| | ||| || | || ||| Sbjct 11955 GTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCG 12014 Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 | | ||||| | |||||| | ||||| ||||| ||||| || ||||| ||| Sbjct 12015 GCTGATTTGGAGACCAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCG 12074 Query 146297 CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAAC 146356 | ||| ||||||| ||||| | ||| ||| | | | || || || ||| Sbjct 12075 TCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAG 12134 Query 146357 AACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGC 146415 | ||| ||| ||||| || || || || || | || || ||||| || || || Sbjct 12135 AGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTACGTCTCAATGGC 12193 Query 146416 GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCG 146475 | | ||||| || || || | || || | |||||||||||| || || || Sbjct 12194 TGCGTCGATGTCCATCTTGTGGATCCCGACGGCCACTCTCATGAGCATGTGCTGCGGTCG 12253 Query 146476 CTCCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCG 146533 ||| ||||||| || ||||| |||| ||| ||| |||||| || ||| | ||| Sbjct 12254 CTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTCCAGAGTCTTGAAGCCG 12311 Query 146534 AAAAATTTGTA 146544 || || ||||| Sbjct 12312 AAGAAGTTGTA 12322 >seq120612 Length=9325 Score = 118 bits (130), Expect = 1e-21 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| |||||| |||||||||| |||||||| ||||| | Sbjct 2705 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 2646 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || ||||||||||| |||||||||||||||||||| || Sbjct 2645 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGG 2606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471030730168320