Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq160674 122 6e-23 seq31855 95.1 8e-15 seq45709 91.5 1e-13 seq130687 87.8 1e-12 seq43707 84.2 1e-11 >seq160674 Length=15346 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 6133 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATAGCAAAAACG 6192 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 6193 ACCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 6252 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 6253 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 6304 >seq31855 Length=4112 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| ||||| || ||| | || Sbjct 873 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCCAGTAGGGACAGTGGGAATATTGT 814 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | || |||||| |||||||||||||||||| || Sbjct 813 TCAACCATTCATGTGCGTCACTAATTAGATGAAGA 779 >seq45709 Length=2918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 381 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCAACTATCGGTCTCGT 322 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| || Sbjct 321 GCCGGTATTTAGCCTAAT 304 >seq130687 Length=3954 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTT-CAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||||| Sbjct 68 CTCTCTCTTCAAAGTTCTTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCGGTCTCG 127 Query 20006 CGGTAATATTTAGCC 20020 | ||||||||| Sbjct 128 TGCCGGTATTTAGCC 142 >seq43707 Length=5432 Score = 84.2 bits (92), Expect = 1e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||| Sbjct 4648 CTCTCTCTTCAAAGTTCTTTTCAGCTTTCCCTTAAGGTACTTGTTGACTATCGGTCTCG 4590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334267731134288