Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq51664 96.9 7e-15 seq34490 87.8 4e-12 seq25015 86.0 1e-11 >seq51664 Length=13532 Score = 96.9 bits (106), Expect = 7e-15 Identities = 337/522 (65%), Gaps = 7/522 (1%) Strand=Plus/Plus Query 293919 GGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTG 293978 ||||||||||| || || | || ||||| ||| ||||||||||||| ||| || Sbjct 11441 GGTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTG 11500 Query 293979 CATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTG 294038 || |||| ||| |||||||| || | |||||| | || ||||| |||| Sbjct 11501 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTG 11560 Query 294039 AGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTC 294098 | || | || || ||| | | ||||||||||||||||||| |||||||| Sbjct 11561 GGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTG 11620 Query 294099 AGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGG 294158 |||||| |||||| |||| |||| | |||| || | || || || || Sbjct 11621 CTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGG 11680 Query 294159 GCACTCGTGAGGGTCA-AGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTCATGAATA 294217 |||||||| ||| || | |||||||| | | | ||||||| | ||||||||| | Sbjct 11681 GCACTCGT-TGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACA 11739 Query 294218 GATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCTCTCCTCACCTTGAT 294277 | || || ||||| |||| || | || | ||| | | | ||||| || | Sbjct 11740 GGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGT 11799 Query 294278 TACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATACACAGCAA 294337 | || ||||||||| | | ||||| || ||| ||||| |||| || | Sbjct 11800 TCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGA 11859 Query 294338 AGGACCCCT----TCCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTCAAACACC 294393 ||| | ||| || || || ||||||| | |||| | ||| ||| | || Sbjct 11860 AGG-CTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACT 11918 Query 294394 TTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCG 294435 ||||||| || ||||| || | ||| | || ||||| ||| Sbjct 11919 CTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCG 11960 >seq34490 Length=1945 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 1031 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 973 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 972 TCGAGTCCCGGCAGAGA 956 >seq25015 Length=2124 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 1762 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 1703 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 1702 TCCCGGCAGAGA 1691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1025644819822768