Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq51664 473 2e-128 seq158314 127 4e-24 seq120612 104 4e-17 seq142310 89.7 1e-12 seq8509 86.0 1e-11 >seq51664 Length=13532 Score = 473 bits (524), Expect = 2e-128 Identities = 1084/1602 (68%), Gaps = 60/1602 (4%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| |||| |||||| | ||| | ||| ||||||| || | |||| Sbjct 10755 GACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCT---CTCTCC 10811 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||| || | |||||||||||| || || || | ||| Sbjct 10812 GTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGG 10871 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | |||||| ||| |||||||||| ||||| || ||| Sbjct 10872 GTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 10931 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| ||||||||||||||||| |||| | Sbjct 10932 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG------GATGGCG 10985 Query 244247 AGTCTGAGCTCGTTC--CAG-TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCAC 244303 | ||| ||| ||| ||| | ||| | || || || | | || ||||| Sbjct 10986 A-TCTT--CTCCTTCAGCAGCTTCCA---GTCCAGCAGTTCGGTGGGCTTCTTCTCCCAC 11039 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||||| ||||||| | |||||||||||||| ||| |||| ||| |||||| ||| Sbjct 11040 ATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCG 11099 Query 244364 TCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 || | | |||||||| |||||| | || |||||||||| ||||||| ||||||||| Sbjct 11100 A-GCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGACCTCGAAGAT 11158 Query 244423 CATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 | |||| | || | |||| ||| ||| ||| | ||| | |||||| Sbjct 11159 TTGAATATTCA-GCAGCTGAGCCTCTTCGCTTTCGAACGGGTAACGCATGAGGATGAAGG 11217 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| || || ||||| || || || || ||||| ||||||||||| | Sbjct 11218 CATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCG 11277 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||||||||| || || |||| ||||| | |||||| | || | ||| | | Sbjct 11278 CTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTT 11337 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | || ||||| | |||||| | || ||| | || ||||| Sbjct 11338 TGGTC-ACAGATGCCAGTTTTTTAAAGTCAAA-----AG---TCCGCTCCGG-GGTGA-- 11385 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 | || |||||| || | |||||| || || || || ||||| || | || Sbjct 11386 ----CGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTG 11441 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || || || ||||| ||||| ||| |||||||||||||||| | ||| || Sbjct 11442 GTGTACTCGATGATTTCTGTGCACAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGG 11501 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||||||||| ||||| |||||| | ||| || || || |||| Sbjct 11502 TTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTGTCTGG 11561 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGC-CTTGCCCTC 244899 | ||| ||| || ||| | | | |||||| ||| | || | ||| |||| Sbjct 11562 GACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGC-GCTTGAACTTCCCCTG 11620 Query 244900 TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG 244959 ||| ||| |||||| || |||||||| |||||| |||||| | || || Sbjct 11621 CTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGG 11680 Query 244960 GCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 |||| || ||| ||||| ||| ||| || || | || || |||| |||||| | Sbjct 11681 GCACT-CGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACA 11739 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGT 245078 ||||||||||||| ||| | | ||| |||||||||| |||||||| ||| || |||| Sbjct 11740 GGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGT 11799 Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| | ||||||| |||||||| |||||| ||||||||||||||| ||| | |||| Sbjct 11800 TCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGA 11859 Query 245139 GGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATG 245197 ||| || || | ||||||||| |||||||| || | | | || | |||| | | Sbjct 11860 AGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTG-TTGTTGTAAACT 11918 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 | ||| | || || || ||||| |||| |||||||||||| ||||||| ||| | Sbjct 11919 CTCAGCATGGGGACGATCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT 11978 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 |||| | ||| || | || || | ||| ||||| ||||||| |||||||| Sbjct 11979 GTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGACCAGGGCGCAT 12038 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | ||||| ||||| || |||||||| |||||| |||||| |||||| Sbjct 12039 TGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAG 12098 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| ||| || | | | | |||||| || |||||| ||||||||| || Sbjct 12099 CTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 12158 Query 245438 TAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | | ||| || || | |||||||| | |||||||||| |||||| Sbjct 12159 CA-CTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGAT 12217 Query 245497 CTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGGT 245551 | | ||| ||| |||||||| ||||||| || ||| | || | || || Sbjct 12218 CCCGACGGC-CACTCTCATGAGCATGTGCTGCGG----TCGCTCGGCCACTTTGCCGTTG 12272 Query 245552 CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| | || |||||| ||||| || |||||||| || ||| Sbjct 12273 ATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAG 12314 >seq158314 Length=2971 Score = 127 bits (140), Expect = 4e-24 Identities = 106/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | ||||| ||||| ||||||||||| || |||||||||||||||||| Sbjct 1820 TGGTGGCCTTCGCTGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCCTCCATCTTCT 1879 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| || |||||||| Sbjct 1880 GGCTGAAGAAGAGAGGCCT-GATGCCCGGTCTGACCTTCTCCAACGAGCTAATCAGCAGA 1938 Query 42825 GACGAGG 42831 ||||||| Sbjct 1939 GACGAGG 1945 >seq120612 Length=9325 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||| || || ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 3671 ACCTGAAACTCCCCAGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATG 3612 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 3611 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 3552 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 3551 CTGTTCCTCACACCATGCCT 3532 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||||| ||||| || || ||| | |||||||||||||| | ||| || Sbjct 2706 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 2647 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 ||| ||| ||||||||||||||||||||||||| | ||| ||||| ||| Sbjct 2646 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 2593 >seq142310 Length=1461 Score = 89.7 bits (98), Expect = 1e-12 Identities = 89/113 (79%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-A 42778 || || ||||||||||||||||| ||| | ||||| ||||||| ||||||||| ||| | Sbjct 929 GCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGGCTCAAGAAGAGA 870 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 || | ||||| || || |||| ||| ||||| || || ||| |||| |||| Sbjct 869 GGACT-AATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGCCGGGATGAGG 818 >seq8509 Length=7231 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||||||| | || |||||| |||||| | | |||||| || ||||| || ||| Sbjct 6668 GACAGGACCACGACTATTGGACAGCTGATCAGCGCTTACCTGGAGAAGAAGAGTGACCTG 6609 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 || || ||| || ||||| |||||||| || |||||||||||| Sbjct 6608 GAGGACCACACAGTGCACCTGCTGTTCTCTGCAAACCGATGGGAA 6564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942374407860480