Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20minor_20[genbank_20GCA_5F001910765.1_202016-12-20] 166,448 sequences; 681,652,711 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq115624 136 9e-27 seq48423 113 1e-19 seq60932 93.3 1e-13 seq47767 93.3 1e-13 >seq115624 Length=278 Score = 136 bits (150), Expect = 9e-27 Identities = 146/195 (75%), Gaps = 12/195 (6%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||||| ||| ||||| |||||||| | || ||||| || || Sbjct 84 TTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAA 143 Query 288342 GATCAGACGCTGTTGAGA---------ATCTGG---GATTCCTTCTTTATCCTGGATTTT 288389 |||||||||||| || |||||| ||| || ||||| ||||||||||| Sbjct 144 GATCAGACGCTGCTGNNNNNNNNNNNNATCTGGAGGGATGCCCTCTTTGTCCTGGATTTT 203 Query 288390 CGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGT 288449 || || |||||||| || ||||| || | || || || || ||||| ||||| || || Sbjct 204 AGCCTTGACGTTTTCAATGGAATCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGT 263 Query 288450 CAGAGTCTTGACGAA 288464 ||| ||||| ||||| Sbjct 264 CAGGGTCTTCACGAA 278 >seq48423 Length=831 Score = 113 bits (124), Expect = 1e-19 Identities = 112/144 (78%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 288337 GCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||||||| || ||| ||||| ||||| ||||||||||| || ||| Sbjct 1 GCAAAGATCAGACGCTGCTG---GTCTGGAGGGATGCCTTCCTTATCCTGGATCTTTGCT 57 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || ||||| || | || || | || || || || ||||| |||||||||||||| Sbjct 58 TTAACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTCCCGGTCAGG 117 Query 288454 GTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| ||||||||| || Sbjct 118 GTCTTCACGAAGATCTGCATTTTG 141 >seq60932 Length=4876 Score = 93.3 bits (102), Expect = 1e-13 Identities = 91/117 (78%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 288360 ATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 ||||||| || ||||| || |||||||| || ||||||||||| || || | ||||| Sbjct 4703 ATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCT 4762 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| || || || ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 4763 GGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 4819 >seq47767 Length=302 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| ||||||||||| || || || |||||||| || || || || | || Sbjct 293 GGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTCAATTGAGTCACTGGGCTCC 234 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 233 ACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCATT 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177138651331744